RNA–Protein interactions for RNA: ENST00000470338.1

TOP3B-215, Transcript of DNA topoisomerase III beta, humanhuman

TSL 5

Gene TOP3B, Length 624 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-215ENST00000470338 BLIDQ8IZY5 108 aa16.1■□□□□ 0.17
TOP3B-215ENST00000470338 DHX38Q92620 1227 aaKnown RBP16.1■□□□□ 0.17
TOP3B-215ENST00000470338 VWCEQ96DN2 955 aa16.1■□□□□ 0.17
TOP3B-215ENST00000470338 SDF4Q9BRK5 362 aa16.1■□□□□ 0.17
TOP3B-215ENST00000470338 PHF20Q9BVI0 1012 aa16.1■□□□□ 0.17
TOP3B-215ENST00000470338 JPH1Q9HDC5 661 aaPredicted RBP16.1■□□□□ 0.17
TOP3B-215ENST00000470338 ZNF215Q9UL58 517 aaPredicted RBP16.1■□□□□ 0.17
TOP3B-215ENST00000470338 DHX15O43143 795 aaKnown RBP16.09■□□□□ 0.17
TOP3B-215ENST00000470338 IQCF3P0C7M6 154 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 SMIM10L2AP0DMW4 78 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 SMIM10L2BP0DMW5 78 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 ACRP10323 421 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 ZNF200P98182 395 aaPredicted RBP16.09■□□□□ 0.17
TOP3B-215ENST00000470338 PTK7Q13308 1070 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 RASIP1Q5U651 963 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 ZNF365Q70YC5 407 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 TRIM50Q86XT4 487 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 RPUSD2Q8IZ73 545 aaKnown RBP16.09■□□□□ 0.17
TOP3B-215ENST00000470338 CCDC155Q8N6L0 562 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 RETREG2Q8NC44 543 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 CAGE1Q8TC20 777 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 SCLYQ96I15 445 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 RNPEPQ9H4A4 650 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 ORC3Q9UBD5 711 aaPredicted RBP16.09■□□□□ 0.17
TOP3B-215ENST00000470338 LIMCH1Q9UPQ0 1083 aa16.09■□□□□ 0.17
TOP3B-215ENST00000470338 DTNBO60941 627 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 LGR5O75473 907 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 ATG7O95352 703 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 XBP1P17861 261 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 RFC2P35250 354 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 ADAM17P78536 824 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 SETQ01105 290 aaPredicted RBP16.08■□□□□ 0.16
TOP3B-215ENST00000470338 TRIM71Q2Q1W2 868 aaKnown RBP16.08■□□□□ 0.16
TOP3B-215ENST00000470338 PSRC1Q6PGN9 363 aaPredicted RBP16.08■□□□□ 0.16
TOP3B-215ENST00000470338 NSUN7Q8NE18 718 aaKnown RBP16.08■□□□□ 0.16
TOP3B-215ENST00000470338 TBCKQ8TEA7 893 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 AFAP1L1Q8TED9 768 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 WASF1Q92558 559 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 RNPC3Q96LT9 517 aaKnown RBP16.08■□□□□ 0.16
TOP3B-215ENST00000470338 PCYT2Q99447 389 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 SMARCAD1Q9H4L7 1026 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 KCNJ14Q9UNX9 436 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 EMSYQ7Z589 1322 aa16.08■□□□□ 0.16
TOP3B-215ENST00000470338 C17orf102A2RUQ5 167 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 IPO5O00410 1097 aaKnown RBP16.07■□□□□ 0.16
TOP3B-215ENST00000470338 FGBP02675 491 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 ACTR2P61160 394 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 ST3GAL1Q11201 340 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 PRR16Q569H4 304 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 SERINC5Q86VE9 423 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 HERVK_113Q902F9 699 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 ATP6V0A1Q93050 837 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 LENG9Q96B70 501 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 GJB4Q9NTQ9 266 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 TBC1D22BQ9NU19 505 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 SETD4Q9NVD3 440 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 ERAP1Q9NZ08 941 aa16.07■□□□□ 0.16
TOP3B-215ENST00000470338 NRCAMQ92823 1304 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 CYP3A7-CYP3A51PA0A087WV96 503 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 IGKV6D-21A0A0A0MT36 114 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 CCNE2O96020 404 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 PFKMP08237 780 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 GNAT1P11488 350 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 CKBP12277 381 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 SELPP16109 830 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 CYP3A7P24462 503 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 SMAD3P84022 425 aaKnown RBP16.06■□□□□ 0.16
TOP3B-215ENST00000470338 ABHD15Q6UXT9 468 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 PLPPR4Q7Z2D5 763 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 KRT25Q7Z3Z0 450 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 GLG1Q92896 1179 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 WNT8BQ93098 351 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 ZSCAN31Q96LW9 406 aaPredicted RBP16.06■□□□□ 0.16
TOP3B-215ENST00000470338 ZNF577Q9BSK1 485 aa16.06■□□□□ 0.16
TOP3B-215ENST00000470338 TREHO43280 583 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 JAK2O60674 1132 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 PARNO95453 639 aaKnown RBP16.05■□□□□ 0.16
TOP3B-215ENST00000470338 GPNMBQ14956 572 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 NONOQ15233 471 aaKnown RBP eCLIP16.05■□□□□ 0.16
TOP3B-215ENST00000470338 Q4G0T1 1027 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 TRAF7Q6Q0C0 670 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 MOXD1Q6UVY6 613 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 IL27Q8NEV9 243 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 MBOAT7Q96N66 472 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 AZI2Q9H6S1 392 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 GBF1Q92538 1859 aa16.05■□□□□ 0.16
TOP3B-215ENST00000470338 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.04■□□□□ 0.16
TOP3B-215ENST00000470338 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.04■□□□□ 0.16
TOP3B-215ENST00000470338 DDX39AO00148 427 aaKnown RBP16.04■□□□□ 0.16
TOP3B-215ENST00000470338 MSH4O15457 936 aa16.04■□□□□ 0.16
TOP3B-215ENST00000470338 STAT5BP51692 787 aa16.04■□□□□ 0.16
TOP3B-215ENST00000470338 RABEP1Q15276 862 aa16.04■□□□□ 0.16
TOP3B-215ENST00000470338 ZNF618Q5T7W0 954 aa16.04■□□□□ 0.16
TOP3B-215ENST00000470338 FAM109BQ6ICB4 259 aaPredicted RBP16.04■□□□□ 0.16
TOP3B-215ENST00000470338 ZNF746Q6NUN9 644 aaPredicted RBP16.04■□□□□ 0.16
TOP3B-215ENST00000470338 LRRC8DQ7L1W4 858 aa16.04■□□□□ 0.16
TOP3B-215ENST00000470338 DEFB128Q7Z7B8 93 aa16.04■□□□□ 0.16
TOP3B-215ENST00000470338 OXER1Q8TDS5 423 aa16.04■□□□□ 0.16
TOP3B-215ENST00000470338 LMBR1Q8WVP7 490 aa16.04■□□□□ 0.16
TOP3B-215ENST00000470338 UIMC1Q96RL1 719 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms