RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CDK7P50613 346 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 TOB1P50616 345 aaPredicted RBP13.51□□□□□ -0.25
VPS13D-204ENST00000469054 PSMC6P62333 389 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 KRT76Q01546 638 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 MLLT1Q03111 559 aaPredicted RBP13.51□□□□□ -0.25
VPS13D-204ENST00000469054 ZNF174Q15697 407 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 TTC38Q5R3I4 469 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 UTP14CQ5TAP6 766 aaKnown RBP13.51□□□□□ -0.25
VPS13D-204ENST00000469054 LRCH2Q5VUJ6 765 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 ZNF746Q6NUN9 644 aaPredicted RBP13.51□□□□□ -0.25
VPS13D-204ENST00000469054 SLC43A3Q8NBI5 491 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 DPF3Q92784 378 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 HAS1Q92839 578 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 KATNAL1Q9BW62 490 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 TEKT3Q9BXF9 490 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 TCEAL9Q9UHQ7 104 aa13.51□□□□□ -0.25
VPS13D-204ENST00000469054 H3BRB1 525 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 HAS3O00219 553 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 MARCH6O60337 910 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 NEMFO60524 1076 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 BAG4O95429 457 aaKnown RBP13.5□□□□□ -0.25
VPS13D-204ENST00000469054 PDIA4P13667 645 aaKnown RBP13.5□□□□□ -0.25
VPS13D-204ENST00000469054 PSEN2P49810 448 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 RTP1P59025 263 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 ORC2Q13416 577 aaPredicted RBP13.5□□□□□ -0.25
VPS13D-204ENST00000469054 MFSD10Q14728 455 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 NBPF20Q3BBV1 942 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 TRIM60Q495X7 471 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 RILPL1Q5EBL4 403 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 MIS18BP1Q6P0N0 1132 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 ABHD15Q6UXT9 468 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 SMAP1Q8IYB5 467 aaPredicted RBP13.5□□□□□ -0.25
VPS13D-204ENST00000469054 SLFN12Q8IYM2 578 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 TUT1Q9H6E5 874 aaKnown RBP13.5□□□□□ -0.25
VPS13D-204ENST00000469054 MTMR6Q9Y217 621 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 FRMPD3Q5JV73 1810 aa13.5□□□□□ -0.25
VPS13D-204ENST00000469054 MROH7Q68CQ1 1323 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 IGKV6D-21A0A0A0MT36 114 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 WDR64B1ANS9 1081 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 EVI5O60447 810 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 LGR5O75473 907 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 SUPT20HL2P0C7V6 817 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 SFNP31947 248 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 CHMP4BP1P59074 171 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 NBR1Q14596 966 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 CALCRLQ16602 461 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 KIAA0753Q2KHM9 967 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 NFRKBQ6P4R8 1299 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 B3GNT9Q6UX72 402 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 ANKRD33Q7Z3H0 272 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 BRAPQ7Z569 592 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 FERMT3Q86UX7 667 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 TRIM50Q86XT4 487 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 GLG1Q92896 1179 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 TOX2Q96NM4 488 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 MTMR9Q96QG7 549 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 PCYT2Q99447 389 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 TMEM60Q9H2L4 133 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 UNC45AQ9H3U1 944 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 SMARCAD1Q9H4L7 1026 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 AZI2Q9H6S1 392 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 ZNF215Q9UL58 517 aaPredicted RBP13.49□□□□□ -0.25
VPS13D-204ENST00000469054 ATP11BQ9Y2G3 1177 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 PCDHA10Q9Y5I2 948 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 MYH7BA7E2Y1 1941 aa13.49□□□□□ -0.25
VPS13D-204ENST00000469054 EMSYQ7Z589 1322 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 CHMP2AO43633 222 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 PQBP1O60828 265 aaKnown RBP13.48□□□□□ -0.25
VPS13D-204ENST00000469054 PSAPP07602 524 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 STAT5BP51692 787 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 JAK3P52333 1124 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 TLE2Q04725 743 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 PTPN11Q06124 597 aaPredicted RBP13.48□□□□□ -0.25
VPS13D-204ENST00000469054 PPP2R5CQ13362 524 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 FAM47CQ5HY64 1035 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 PLPPR4Q7Z2D5 763 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 MIER3Q7Z3K6 550 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 SESTD1Q86VW0 696 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 RDM1Q8NG50 284 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 DISC1Q9NRI5 854 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 ERAP1Q9NZ08 941 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 VAV3Q9UKW4 847 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 PCDHA12Q9UN75 941 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 SAMM50Q9Y512 469 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 PCDHB6Q9Y5E3 794 aa13.48□□□□□ -0.25
VPS13D-204ENST00000469054 MKI67P46013 3256 aaKnown RBP13.47□□□□□ -0.25
VPS13D-204ENST00000469054 DCDC2CA8MYV0 355 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 BACH1O14867 736 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 TXKP42681 527 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 RESTQ13127 1097 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 FAM160B1Q5W0V3 765 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 SWSAP1Q6NVH7 229 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 CCDC60Q8IWA6 550 aaPredicted RBP13.47□□□□□ -0.25
VPS13D-204ENST00000469054 FAM126BQ8IXS8 530 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 C7orf31Q8N865 590 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 C4orf32Q8N8J7 132 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 AFAP1L1Q8TED9 768 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 PPP1R13LQ8WUF5 828 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 RNPEPQ9H4A4 650 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 ZSCAN16Q9H4T2 348 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms