RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 CNTNAP5Q8WYK1 1306 aa28.12■■■□□ 2.09
PTCH1-210ENST00000468211 NCOR1O75376 2440 aa28.11■■■□□ 2.09
PTCH1-210ENST00000468211 GTPBP6O43824 516 aaPredicted RBP28.11■■■□□ 2.09
PTCH1-210ENST00000468211 EFCAB14O75071 495 aa28.11■■■□□ 2.09
PTCH1-210ENST00000468211 TCF7P36402 384 aaPredicted RBP28.11■■■□□ 2.09
PTCH1-210ENST00000468211 FUT2Q10981 343 aa28.11■■■□□ 2.09
PTCH1-210ENST00000468211 WWC2Q6AWC2 1192 aa28.11■■■□□ 2.09
PTCH1-210ENST00000468211 TYW1BQ6NUM6 668 aa28.11■■■□□ 2.09
PTCH1-210ENST00000468211 ZNF215Q9UL58 517 aaPredicted RBP28.11■■■□□ 2.09
PTCH1-210ENST00000468211 GSTTP1A0A1W2PQM5 241 aa28.1■■■□□ 2.09
PTCH1-210ENST00000468211 LINC01553A4QN01 128 aa28.1■■■□□ 2.09
PTCH1-210ENST00000468211 RNF20Q5VTR2 975 aa28.1■■■□□ 2.09
PTCH1-210ENST00000468211 ADAMTS19Q8TE59 1207 aa28.1■■■□□ 2.09
PTCH1-210ENST00000468211 MTUS1Q9ULD2 1270 aa28.1■■■□□ 2.09
PTCH1-210ENST00000468211 ARHGAP4P98171 946 aa28.09■■■□□ 2.09
PTCH1-210ENST00000468211 SKIV2LQ15477 1246 aaKnown RBP28.09■■■□□ 2.09
PTCH1-210ENST00000468211 GIMAP8Q8ND71 665 aaPredicted RBP28.09■■■□□ 2.09
PTCH1-210ENST00000468211 GDPD5Q8WTR4 605 aa28.09■■■□□ 2.09
PTCH1-210ENST00000468211 SPDYE3A6NKU9 549 aa28.08■■■□□ 2.09
PTCH1-210ENST00000468211 TNFRSF10AO00220 468 aa28.08■■■□□ 2.09
PTCH1-210ENST00000468211 GNAT1P11488 350 aa28.08■■■□□ 2.09
PTCH1-210ENST00000468211 SYNE3Q6ZMZ3 975 aa28.08■■■□□ 2.09
PTCH1-210ENST00000468211 DHX32Q7L7V1 743 aaKnown RBP28.08■■■□□ 2.09
PTCH1-210ENST00000468211 TSPYL2Q9H2G4 693 aaPredicted RBP28.08■■■□□ 2.09
PTCH1-210ENST00000468211 SUGCTQ9HAC7 445 aa28.08■■■□□ 2.09
PTCH1-210ENST00000468211 ERVK-21P61565 698 aa28.07■■■□□ 2.08
PTCH1-210ENST00000468211 MTMR1Q13613 665 aa28.07■■■□□ 2.08
PTCH1-210ENST00000468211 TSGA10IPQ3SY00 556 aa28.07■■■□□ 2.08
PTCH1-210ENST00000468211 RUFY4Q6ZNE9 571 aa28.07■■■□□ 2.08
PTCH1-210ENST00000468211 MYOCDQ8IZQ8 938 aa28.07■■■□□ 2.08
PTCH1-210ENST00000468211 CDHR1Q96JP9 859 aa28.07■■■□□ 2.08
PTCH1-210ENST00000468211 PGBD1Q96JS3 809 aa28.07■■■□□ 2.08
PTCH1-210ENST00000468211 JADE2Q9NQC1 790 aa28.07■■■□□ 2.08
PTCH1-210ENST00000468211 FAM217BQ9NTX9 383 aaPredicted RBP28.07■■■□□ 2.08
PTCH1-210ENST00000468211 BDP1A6H8Y1 2624 aa28.07■■■□□ 2.08
PTCH1-210ENST00000468211 BRWD1Q9NSI6 2320 aa28.06■■■□□ 2.08
PTCH1-210ENST00000468211 CAND2O75155 1236 aa28.06■■■□□ 2.08
PTCH1-210ENST00000468211 AMHP03971 560 aa28.06■■■□□ 2.08
PTCH1-210ENST00000468211 BMP1P13497 986 aa28.06■■■□□ 2.08
PTCH1-210ENST00000468211 RTN1Q16799 776 aa28.06■■■□□ 2.08
PTCH1-210ENST00000468211 FAM26DQ5JW98 314 aa28.06■■■□□ 2.08
PTCH1-210ENST00000468211 CYP2W1Q8TAV3 490 aa28.06■■■□□ 2.08
PTCH1-210ENST00000468211 SEPT1Q8WYJ6 367 aa28.06■■■□□ 2.08
PTCH1-210ENST00000468211 SEPT8Q92599 483 aa28.06■■■□□ 2.08
PTCH1-210ENST00000468211 TGS1Q96RS0 853 aaKnown RBP28.06■■■□□ 2.08
PTCH1-210ENST00000468211 RBM28Q9NW13 759 aaKnown RBP28.06■■■□□ 2.08
PTCH1-210ENST00000468211 ZBTB43O43298 467 aa28.05■■■□□ 2.08
PTCH1-210ENST00000468211 CDC45O75419 566 aa28.05■■■□□ 2.08
PTCH1-210ENST00000468211 MARK3P27448 753 aa28.05■■■□□ 2.08
PTCH1-210ENST00000468211 KCNQ1P51787 676 aa28.05■■■□□ 2.08
PTCH1-210ENST00000468211 NLRC5Q86WI3 1866 aa28.05■■■□□ 2.08
PTCH1-210ENST00000468211 NRCAMQ92823 1304 aa28.05■■■□□ 2.08
PTCH1-210ENST00000468211 NECAB3Q96P71 396 aaPredicted RBP28.05■■■□□ 2.08
PTCH1-210ENST00000468211 V9GY48 417 aaPredicted RBP28.05■■■□□ 2.08
PTCH1-210ENST00000468211 LOC101059915A0A1B0GWI6 518 aaPredicted RBP28.04■■■□□ 2.08
PTCH1-210ENST00000468211 CHRNA1P02708 482 aa28.04■■■□□ 2.08
PTCH1-210ENST00000468211 CDC27P30260 824 aa28.04■■■□□ 2.08
PTCH1-210ENST00000468211 NAPAP54920 295 aa28.04■■■□□ 2.08
PTCH1-210ENST00000468211 HTRA4P83105 476 aaPredicted RBP28.04■■■□□ 2.08
PTCH1-210ENST00000468211 UHRF1Q96T88 793 aaPredicted RBP28.04■■■□□ 2.08
PTCH1-210ENST00000468211 PCYT2Q99447 389 aa28.04■■■□□ 2.08
PTCH1-210ENST00000468211 C17orf80Q9BSJ5 609 aa28.04■■■□□ 2.08
PTCH1-210ENST00000468211 RIC8AQ9NPQ8 531 aa28.04■■■□□ 2.08
PTCH1-210ENST00000468211 INSL6Q9Y581 213 aa28.04■■■□□ 2.08
PTCH1-210ENST00000468211 LOXHD1Q8IVV2 1947 aa28.04■■■□□ 2.08
PTCH1-210ENST00000468211 KLF18A0A0U1RQI7 1052 aa28.03■■■□□ 2.08
PTCH1-210ENST00000468211 STXBP3O00186 592 aa28.03■■■□□ 2.08
PTCH1-210ENST00000468211 CPA1P15085 419 aa28.03■■■□□ 2.08
PTCH1-210ENST00000468211 PPFIA1Q13136 1202 aa28.03■■■□□ 2.08
PTCH1-210ENST00000468211 ZBTB10Q96DT7 871 aa28.03■■■□□ 2.08
PTCH1-210ENST00000468211 MXRA8Q9BRK3 442 aa28.03■■■□□ 2.08
PTCH1-210ENST00000468211 KCNH7Q9NS40 1196 aa28.03■■■□□ 2.08
PTCH1-210ENST00000468211 GOLGA8AA7E2F4 631 aa28.02■■■□□ 2.08
PTCH1-210ENST00000468211 GOLGA8BA8MQT2 603 aa28.02■■■□□ 2.08
PTCH1-210ENST00000468211 GRIK4Q16099 956 aa28.02■■■□□ 2.08
PTCH1-210ENST00000468211 MARCH8Q5T0T0 291 aa28.02■■■□□ 2.08
PTCH1-210ENST00000468211 SP7Q8TDD2 431 aaPredicted RBP28.02■■■□□ 2.08
PTCH1-210ENST00000468211 GLG1Q92896 1179 aa28.02■■■□□ 2.08
PTCH1-210ENST00000468211 TMEM260Q9NX78 707 aa28.02■■■□□ 2.08
PTCH1-210ENST00000468211 ERAP1Q9NZ08 941 aa28.02■■■□□ 2.08
PTCH1-210ENST00000468211 MAFGO15525 162 aa28.01■■■□□ 2.07
PTCH1-210ENST00000468211 ARP10275 920 aa28.01■■■□□ 2.07
PTCH1-210ENST00000468211 PPP1R18Q6NYC8 613 aa28.01■■■□□ 2.07
PTCH1-210ENST00000468211 TOP1MTQ969P6 601 aa28.01■■■□□ 2.07
PTCH1-210ENST00000468211 ANO3Q9BYT9 981 aa28.01■■■□□ 2.07
PTCH1-210ENST00000468211 UPP2O95045 317 aa28■■■□□ 2.07
PTCH1-210ENST00000468211 ADCY7P51828 1080 aa28■■■□□ 2.07
PTCH1-210ENST00000468211 MGAT3Q09327 533 aa28■■■□□ 2.07
PTCH1-210ENST00000468211 RPAINQ86UA6 219 aa28■■■□□ 2.07
PTCH1-210ENST00000468211 IL27Q8NEV9 243 aa28■■■□□ 2.07
PTCH1-210ENST00000468211 IFIH1Q9BYX4 1025 aaKnown RBP28■■■□□ 2.07
PTCH1-210ENST00000468211 SMARCAD1Q9H4L7 1026 aa28■■■□□ 2.07
PTCH1-210ENST00000468211 EHMT1Q9H9B1 1298 aa28■■■□□ 2.07
PTCH1-210ENST00000468211 JPH1Q9HDC5 661 aaPredicted RBP28■■■□□ 2.07
PTCH1-210ENST00000468211 BARHL2Q9NY43 387 aa28■■■□□ 2.07
PTCH1-210ENST00000468211 MBLAC1A4D2B0 266 aaPredicted RBP27.99■■■□□ 2.07
PTCH1-210ENST00000468211 SMCO2A6NFE2 343 aa27.99■■■□□ 2.07
PTCH1-210ENST00000468211 GHRP10912 638 aa27.99■■■□□ 2.07
PTCH1-210ENST00000468211 ADD1P35611 737 aaKnown RBP27.99■■■□□ 2.07
PTCH1-210ENST00000468211 KRT32Q14532 448 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms