RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 IFT88Q13099 833 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 SH3RF1Q7Z6J0 888 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ZSCAN29Q8IWY8 852 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 EXOC8Q8IYI6 725 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 KIRREL3Q8IZU9 778 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 HAUS1Q96CS2 278 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 CFAP157Q5JU67 520 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ALKBH5Q6P6C2 394 aaKnown RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ACTRT1Q8TDG2 376 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ANKS1AQ92625 1134 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ATP2A3Q93084 1043 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 AMNQ9BXJ7 453 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 NEDD4P46934 1319 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 PNMA6FA0A0J9YX94 578 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 LRRD1A4D1F6 860 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 PPP1R3GB7ZBB8 358 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ATP5BP06576 529 aaKnown RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ATP2B2Q01814 1243 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 CHRNDQ07001 517 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ST3GAL1Q11201 340 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 EPSTI1Q96J88 318 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ORAI2Q96SN7 254 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ZHX2Q9Y6X8 837 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 TTLL1O95922 423 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 A1BGP04217 495 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 AP1ARQ63HQ0 302 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 DHX38Q92620 1227 aaKnown RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 KDM4CQ9H3R0 1056 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 IFT122Q9HBG6 1241 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 UBN1Q9NPG3 1134 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 KLC4Q9NSK0 619 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 NAB2Q15742 525 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 AENQ8WTP8 325 aaKnown RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 KAZALD1Q96I82 304 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 PSTPIP2Q9H939 334 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 FAM53CQ9NYF3 392 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 ASIC3Q9UHC3 531 aa7.64□□□□□ -1.19
SYNE1-216ENST00000461872 SMG5Q9UPR3 1016 aaKnown RBP7.64□□□□□ -1.19
SYNE1-216ENST00000461872 CCND1P24385 295 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 SLC1A4P43007 532 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 ALKBH8Q96BT7 664 aaKnown RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 FRMD8Q9BZ67 464 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 ABLIM1O14639 778 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 TXKP42681 527 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 RASSF7Q02833 373 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 PNMA8AQ86V59 439 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 MRPL47Q9HD33 250 aaKnown RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 ATP2B4P23634 1241 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 ANKRD20A3Q5VUR7 823 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 SHOX2O60902 331 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 CDAN1Q8IWY9 1227 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 WNT8AQ9H1J5 351 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 SCINQ9Y6U3 715 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 AP5Z1O43299 807 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 DYNC1I2Q13409 638 aaKnown RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 TRIM72Q6ZMU5 477 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 ZNF572Q7Z3I7 529 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 NACC1Q96RE7 527 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 MPHOSPH10O00566 681 aaKnown RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 EIF3DO15371 548 aaKnown RBP eCLIP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 LSP1P33241 339 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 PRCPP42785 496 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 DCAF17Q5H9S7 520 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 RAD9BQ6WBX8 426 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 LCORLQ8N3X6 602 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 DCAF4Q8WV16 495 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 KRT12Q99456 494 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 RTCBQ9Y3I0 505 aaKnown RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 CDC27P30260 824 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 HHATQ5VTY9 493 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 RAD54LQ92698 747 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 PIH1D3Q9NQM4 214 aaKnown RBP7.63□□□□□ -1.19
SYNE1-216ENST00000461872 HOMER2Q9NSB8 354 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 TMOD4Q9NZQ9 345 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 CHD4Q14839 1912 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 ARHGEF35A5YM69 484 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 MFAP3P55082 362 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 KIAA1586Q9HCI6 787 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 GGA1Q9UJY5 639 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 SYNPO2Q9UMS6 1093 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 ZNF804BA4D1E1 1349 aa7.63□□□□□ -1.19
SYNE1-216ENST00000461872 EXOC3O60645 756 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 ADRA2BP18089 450 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 POLR2BP30876 1174 aaKnown RBP7.62□□□□□ -1.19
SYNE1-216ENST00000461872 LRCH2Q5VUJ6 765 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 CYFIP1Q7L576 1253 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 GSTA5Q7RTV2 222 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 STAG2Q8N3U4 1231 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 AFAP1L2Q8N4X5 818 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 PPP1R14CQ8TAE6 165 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 CCT8L2Q96SF2 557 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 ANKZF1Q9H8Y5 726 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 KANSL2Q9H9L4 492 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 CNOT7Q9UIV1 285 aaKnown RBP7.62□□□□□ -1.19
SYNE1-216ENST00000461872 ZBTB22O15209 634 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 FNTAP49354 379 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 PARP9Q8IXQ6 854 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 TTC39CQ8N584 583 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 CNBD1Q8NA66 436 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms