RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 H0YGN5 161 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 H3BRB1 525 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 DHX15O43143 795 aaKnown RBP25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 SLC37A4O43826 429 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 GAS7O60861 476 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 SYN1P17600 705 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 LRCH2Q5VUJ6 765 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 MCTP1Q6DN14 999 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 NOSTRINQ8IVI9 506 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 FAM126BQ8IXS8 530 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 C7orf31Q8N865 590 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 TUT1Q9H6E5 874 aaKnown RBP25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 PDLIM7Q9NR12 457 aa25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 MYH9P35579 1960 aaKnown RBP25.86■■□□□ 1.73
CCDC28B-203ENST00000461819 KAT6AQ92794 2004 aa25.85■■□□□ 1.73
CCDC28B-203ENST00000461819 KRT76Q01546 638 aa25.85■■□□□ 1.73
CCDC28B-203ENST00000461819 LARP1BQ659C4 914 aaKnown RBP25.85■■□□□ 1.73
CCDC28B-203ENST00000461819 GLG1Q92896 1179 aa25.85■■□□□ 1.73
CCDC28B-203ENST00000461819 SLC5A5Q92911 643 aa25.85■■□□□ 1.73
CCDC28B-203ENST00000461819 INTS4Q96HW7 963 aaKnown RBP25.85■■□□□ 1.73
CCDC28B-203ENST00000461819 RIT2Q99578 217 aa25.85■■□□□ 1.73
CCDC28B-203ENST00000461819 FOXD4L1Q9NU39 408 aa25.85■■□□□ 1.73
CCDC28B-203ENST00000461819 LTBP2Q14767 1821 aa25.85■■□□□ 1.73
CCDC28B-203ENST00000461819 HAS3O00219 553 aa25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 MARCH6O60337 910 aa25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 CCNE2O96020 404 aa25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 ATP2B1P20020 1258 aa25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 PTPN11Q06124 597 aaPredicted RBP25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 FAAP100Q0VG06 881 aa25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 GJA10Q969M2 543 aa25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 TEKT3Q9BXF9 490 aa25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 AZI2Q9H6S1 392 aa25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 TMEM39AQ9NV64 488 aa25.84■■□□□ 1.73
CCDC28B-203ENST00000461819 KIF28PB7ZC32 967 aa25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 B4GALT4O60513 344 aa25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 HSP90AA1P07900 732 aaKnown RBP25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 ZNF746Q6NUN9 644 aaPredicted RBP25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 POTEDQ86YR6 584 aa25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 ETNPPLQ8TBG4 499 aa25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 TRPV6Q9H1D0 765 aa25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 SMARCAD1Q9H4L7 1026 aa25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 NOL7Q9UMY1 257 aaKnown RBP25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 CEP290O15078 2479 aa25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 EMSYQ7Z589 1322 aa25.83■■□□□ 1.73
CCDC28B-203ENST00000461819 TRIP12Q14669 1992 aaPredicted RBP25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 CHMP2AO43633 222 aa25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 CD4P01730 458 aa25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 PDCP20941 246 aa25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 U2AF2P26368 475 aaKnown RBP eCLIP25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 MIS18BP1Q6P0N0 1132 aa25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 SH3RF1Q7Z6J0 888 aa25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 SMAP1Q8IYB5 467 aaPredicted RBP25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 TRMT13Q9NUP7 481 aaKnown RBP25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 ERAP1Q9NZ08 941 aa25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 HDAC6Q9UBN7 1215 aa25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 NOD1Q9Y239 953 aa25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 SAMM50Q9Y512 469 aa25.82■■□□□ 1.72
CCDC28B-203ENST00000461819 BACH1O14867 736 aa25.81■■□□□ 1.72
CCDC28B-203ENST00000461819 NEMFO60524 1076 aa25.81■■□□□ 1.72
CCDC28B-203ENST00000461819 SUPT20HL2P0C7V6 817 aa25.81■■□□□ 1.72
CCDC28B-203ENST00000461819 MARK3P27448 753 aa25.81■■□□□ 1.72
CCDC28B-203ENST00000461819 PRPF38BQ5VTL8 546 aaKnown RBP25.81■■□□□ 1.72
CCDC28B-203ENST00000461819 SESTD1Q86VW0 696 aa25.81■■□□□ 1.72
CCDC28B-203ENST00000461819 FAM20AQ96MK3 541 aa25.81■■□□□ 1.72
CCDC28B-203ENST00000461819 KCNMB3Q9NPA1 279 aa25.81■■□□□ 1.72
CCDC28B-203ENST00000461819 GTF2IRD1Q9UHL9 959 aa25.81■■□□□ 1.72
CCDC28B-203ENST00000461819 WDR64B1ANS9 1081 aa25.8■■□□□ 1.72
CCDC28B-203ENST00000461819 TBX3O15119 743 aa25.8■■□□□ 1.72
CCDC28B-203ENST00000461819 LGR5O75473 907 aa25.8■■□□□ 1.72
CCDC28B-203ENST00000461819 PSMD10O75832 226 aa25.8■■□□□ 1.72
CCDC28B-203ENST00000461819 ATG7O95352 703 aa25.8■■□□□ 1.72
CCDC28B-203ENST00000461819 BAG4O95429 457 aaKnown RBP25.8■■□□□ 1.72
CCDC28B-203ENST00000461819 FAM160B1Q5W0V3 765 aa25.8■■□□□ 1.72
CCDC28B-203ENST00000461819 ABHD15Q6UXT9 468 aa25.8■■□□□ 1.72
CCDC28B-203ENST00000461819 VPS37CA5D8V6 355 aaPredicted RBP25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 TRIM43BA6NCK2 446 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 WNT7AO00755 349 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 PSAPP07602 524 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 SMIM10L2AP0DMW4 78 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 SMIM10L2BP0DMW5 78 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 MCM7P33993 719 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 STAT5BP51692 787 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 CALCRLQ16602 461 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 PTGISQ16647 500 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 GDF6Q6KF10 455 aaPredicted RBP25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 SLFN12Q8IYM2 578 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 TRIM43Q96BQ3 446 aaPredicted RBP25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 PCYT2Q99447 389 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 LBHD1Q9BQE6 289 aaPredicted RBP25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 UNC45AQ9H3U1 944 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 TBX21Q9UL17 535 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 PCDHA10Q9Y5I2 948 aa25.79■■□□□ 1.72
CCDC28B-203ENST00000461819 KIAA0355O15063 1070 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 RAG1P15918 1043 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 SFNP31947 248 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 TRAPPC10P48553 1259 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 JAK3P52333 1124 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 TTC38Q5R3I4 469 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 PLPPR4Q7Z2D5 763 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 CCDC60Q8IWA6 550 aaPredicted RBP25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms