RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	DCAF4	Q8WV16	495 aa		9.74	□□□□□ -0.85
SYNE1-215	ENST00000460912	FBXL5	Q9UKA1	691 aa		9.74	□□□□□ -0.85
SYNE1-215	ENST00000460912	SNX12	Q9UMY4	172 aa		9.74	□□□□□ -0.85
SYNE1-215	ENST00000460912	POTEB2	H3BUK9	544 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	TBX3	O15119	743 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	SHOX2	O60902	331 aa	Predicted RBP	9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	RAD17	O75943	681 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	CLSTN1	O94985	981 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	NBPF9	Q3BBW0	867 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	CEP63	Q96MT8	703 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	PLIN2	Q99541	437 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	NUP88	Q99567	741 aa	Predicted RBP	9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	PLXNA1	Q9UIW2	1896 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	MED24	O75448	989 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	SREBF1	P36956	1147 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	KIAA1755	Q5JYT7	1200 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	LRRC47	Q8N1G4	583 aa	Known RBP	9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	TRPM4	Q8TD43	1214 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	DHX36	Q9H2U1	1008 aa	Known RBP	9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	USP40	Q9NVE5	1235 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	BCS1L	Q9Y276	419 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	PCDHGC5	Q9Y5F6	944 aa		9.73	□□□□□ -0.85
SYNE1-215	ENST00000460912	FRMPD4	Q14CM0	1322 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	UBE2S	Q16763	222 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	NOL9	Q5SY16	702 aa	Known RBP	9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	KLHDC7A	Q5VTJ3	777 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	TLR10	Q9BXR5	811 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	ZCCHC17	Q9NP64	241 aa	Known RBP	9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	SLC39A2	Q9NP94	309 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	N4BP1	O75113	896 aa	Known RBP	9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	TUBB	P07437	444 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	CASP5	P51878	434 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	EDRF1	Q3B7T1	1238 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	SV2B	Q7L1I2	683 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	IRF2BP2	Q7Z5L9	587 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	KIAA0825	Q8IV33	1275 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	FAM114A1	Q8IWE2	563 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	MNS1	Q8NEH6	495 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	SECISBP2L	Q93073	1101 aa	Known RBP	9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	GJA10	Q969M2	543 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	TRIM47	Q96LD4	638 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	GPR88	Q9GZN0	384 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	ARFGAP3	Q9NP61	516 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	LRWD1	Q9UFC0	647 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	OAS2	P29728	719 aa	Known RBP	9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	GIT2	Q14161	759 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	KCTD17	Q8N5Z5	321 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	EXOC4	Q96A65	974 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	RPGRIP1	Q96KN7	1286 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	PCDHA13	Q9Y5I0	950 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	KIAA1217	Q5T5P2	1943 aa		9.72	□□□□□ -0.85
SYNE1-215	ENST00000460912	ASTN1	O14525	1302 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	DDX25	Q9UHL0	483 aa	Known RBP	9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	HPCAL4	Q9UM19	191 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	USP20	Q9Y2K6	914 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	PPP2R3B	Q9Y5P8	575 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	LRRC53	A6NM62	1247 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	FAM86B1	E9PN63	330 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	CES2	O00748	559 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	ZNF185	O15231	689 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	FAM86B2	P0C5J1	330 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	ECHS1	P30084	290 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	KRT83	P78385	493 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	AMPD3	Q01432	767 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	CASP8	Q14790	479 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	QRICH1	Q2TAL8	776 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	KRT26	Q7Z3Y9	468 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	CCDC155	Q8N6L0	562 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	LRRC57	Q8N9N7	239 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	PLCB1	Q9NQ66	1216 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	ARGLU1	Q9NWB6	273 aa	Predicted RBP	9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	CEP72	Q9P209	647 aa		9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	ZNF219	Q9P2Y4	722 aa	Predicted RBP	9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	PUF60	Q9UHX1	559 aa	Known RBP	9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	AJAP1	Q9UKB5	411 aa	Predicted RBP	9.71	□□□□□ -0.85
SYNE1-215	ENST00000460912	SRGAP2	O75044	1071 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	TXK	P42681	527 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	ZNF131	P52739	623 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	TBC1D8B	Q0IIM8	1120 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	AP3B2	Q13367	1082 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	MOGS	Q13724	837 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	TEX35	Q5T0J7	233 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	CCNI2	Q6ZMN8	369 aa	Predicted RBP	9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	SLFN11	Q7Z7L1	901 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	SYT2	Q8N9I0	419 aa	Predicted RBP	9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	CCDC17	Q96LX7	622 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	NOC4L	Q9BVI4	516 aa	Known RBP	9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	TDRD3	Q9H7E2	651 aa	Known RBP	9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	STXBP5L	Q9Y2K9	1186 aa		9.71	□□□□□ -0.86
SYNE1-215	ENST00000460912	PLA2G6	O60733	806 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	PRKCI	P41743	596 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	KIF11	P52732	1056 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	ASIC1	P78348	528 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	CATSPER3	Q86XQ3	398 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	AMOTL1	Q8IY63	956 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	SLC30A5	Q8TAD4	765 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	COG1	Q8WTW3	980 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	CUL5	Q93034	780 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	JAKMIP2	Q96AA8	810 aa		9.7	□□□□□ -0.86

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