RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CEP55Q53EZ4 464 aa24.22■■□□□ 1.47
HMGB3-205ENST00000455596 ZNF618Q5T7W0 954 aa24.22■■□□□ 1.47
HMGB3-205ENST00000455596 CCDC148Q8NFR7 591 aa24.22■■□□□ 1.47
HMGB3-205ENST00000455596 CYP2W1Q8TAV3 490 aa24.22■■□□□ 1.47
HMGB3-205ENST00000455596 JPH1Q9HDC5 661 aaPredicted RBP24.22■■□□□ 1.47
HMGB3-205ENST00000455596 LAMA2P24043 3122 aaKnown RBP24.22■■□□□ 1.47
HMGB3-205ENST00000455596 NFASCO94856 1347 aa24.21■■□□□ 1.47
HMGB3-205ENST00000455596 TREHO43280 583 aa24.21■■□□□ 1.47
HMGB3-205ENST00000455596 PPFIA3O75145 1194 aa24.21■■□□□ 1.47
HMGB3-205ENST00000455596 BAIAP3O94812 1187 aa24.21■■□□□ 1.47
HMGB3-205ENST00000455596 ATP2A2P16615 1042 aaKnown RBP24.21■■□□□ 1.47
HMGB3-205ENST00000455596 ARHGAP4P98171 946 aa24.21■■□□□ 1.47
HMGB3-205ENST00000455596 TRIM22Q8IYM9 498 aa24.21■■□□□ 1.47
HMGB3-205ENST00000455596 REXO1Q8N1G1 1221 aaKnown RBP24.21■■□□□ 1.47
HMGB3-205ENST00000455596 MYLIPQ8WY64 445 aa24.21■■□□□ 1.47
HMGB3-205ENST00000455596 SDF4Q9BRK5 362 aa24.21■■□□□ 1.47
HMGB3-205ENST00000455596 SLC9A2Q9UBY0 812 aa24.21■■□□□ 1.47
HMGB3-205ENST00000455596 NBNO60934 754 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 ARP10275 920 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 THPOP40225 353 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 GPNMBQ14956 572 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 NIPA1Q7RTP0 329 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 BICD2Q8TD16 824 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 SLC9A7Q96T83 725 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 LARP6Q9BRS8 491 aaKnown RBP24.2■■□□□ 1.46
HMGB3-205ENST00000455596 SETD4Q9NVD3 440 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 MICAL3Q7RTP6 2002 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 WDR81Q562E7 1941 aa24.2■■□□□ 1.46
HMGB3-205ENST00000455596 MEIS1O00470 390 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 CPLX1O14810 134 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 CXCL10P02778 98 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 RABGGTBP53611 331 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 SSRP1Q08945 709 aaKnown RBP24.19■■□□□ 1.46
HMGB3-205ENST00000455596 GRIN2CQ14957 1233 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 CNKSR3Q6P9H4 555 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 TRAF7Q6Q0C0 670 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 GLG1Q92896 1179 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 NKX2-4Q9H2Z4 354 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 SMARCAD1Q9H4L7 1026 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 AGO4Q9HCK5 861 aaKnown RBP24.19■■□□□ 1.46
HMGB3-205ENST00000455596 ERAP1Q9NZ08 941 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 PCDHA11Q9Y5I1 949 aa24.19■■□□□ 1.46
HMGB3-205ENST00000455596 MYH9P35579 1960 aaKnown RBP24.19■■□□□ 1.46
HMGB3-205ENST00000455596 EMSYQ7Z589 1322 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 NRCAMQ92823 1304 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 CYP3A4P08684 503 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 ANAPC15P60006 121 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 STK3Q13188 491 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 CPLX2Q6PUV4 134 aaKnown RBP24.18■■□□□ 1.46
HMGB3-205ENST00000455596 PHOSPHO2Q8TCD6 241 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 LMBR1Q8WVP7 490 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 CRYGNQ8WXF5 182 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 SLC28A3Q9HAS3 691 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 SH3GLB2Q9NR46 395 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 VPS54Q9P1Q0 977 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 YBX2Q9Y2T7 364 aaKnown RBP24.18■■□□□ 1.46
HMGB3-205ENST00000455596 SIP14410 1827 aa24.18■■□□□ 1.46
HMGB3-205ENST00000455596 RSPH10B2B2RC85 870 aa24.17■■□□□ 1.46
HMGB3-205ENST00000455596 ADAMTS3O15072 1205 aa24.17■■□□□ 1.46
HMGB3-205ENST00000455596 EIF5BO60841 1220 aaKnown RBP24.17■■□□□ 1.46
HMGB3-205ENST00000455596 CAND2O75155 1236 aa24.17■■□□□ 1.46
HMGB3-205ENST00000455596 RSPH10BP0C881 870 aa24.17■■□□□ 1.46
HMGB3-205ENST00000455596 FOSL2P15408 326 aa24.17■■□□□ 1.46
HMGB3-205ENST00000455596 ADAM17P78536 824 aa24.17■■□□□ 1.46
HMGB3-205ENST00000455596 PLA2G4DQ86XP0 818 aa24.17■■□□□ 1.46
HMGB3-205ENST00000455596 SLC17A8Q8NDX2 589 aa24.17■■□□□ 1.46
HMGB3-205ENST00000455596 FAM86B1E9PN63 330 aa24.16■■□□□ 1.46
HMGB3-205ENST00000455596 LGR5O75473 907 aa24.16■■□□□ 1.46
HMGB3-205ENST00000455596 FAM86B2P0C5J1 330 aa24.16■■□□□ 1.46
HMGB3-205ENST00000455596 MARK3P27448 753 aa24.16■■□□□ 1.46
HMGB3-205ENST00000455596 KCNJ6P48051 423 aa24.16■■□□□ 1.46
HMGB3-205ENST00000455596 ACTR2P61160 394 aa24.16■■□□□ 1.46
HMGB3-205ENST00000455596 ITGB3BPQ13352 177 aaPredicted RBP24.16■■□□□ 1.46
HMGB3-205ENST00000455596 AZI2Q9H6S1 392 aa24.16■■□□□ 1.46
HMGB3-205ENST00000455596 DEXIO95424 95 aa24.15■■□□□ 1.46
HMGB3-205ENST00000455596 NLRP5P59047 1200 aa24.15■■□□□ 1.46
HMGB3-205ENST00000455596 PPFIA1Q13136 1202 aa24.15■■□□□ 1.46
HMGB3-205ENST00000455596 MBTPS1Q14703 1052 aa24.15■■□□□ 1.46
HMGB3-205ENST00000455596 RASGRP4Q8TDF6 673 aa24.15■■□□□ 1.46
HMGB3-205ENST00000455596 LOXHD1Q8IVV2 1947 aa24.15■■□□□ 1.46
HMGB3-205ENST00000455596 MYO9BQ13459 2157 aa24.15■■□□□ 1.46
HMGB3-205ENST00000455596 IGLV3-22A0A075B6J6 115 aa24.14■■□□□ 1.45
HMGB3-205ENST00000455596 ABHD14A-ACY1A0A1B0GW23 586 aa24.14■■□□□ 1.45
HMGB3-205ENST00000455596 EFCAB14O75071 495 aa24.14■■□□□ 1.45
HMGB3-205ENST00000455596 MYOGP15173 224 aa24.14■■□□□ 1.45
HMGB3-205ENST00000455596 WDR5P61964 334 aaKnown RBP24.14■■□□□ 1.45
HMGB3-205ENST00000455596 SETQ01105 290 aaPredicted RBP24.14■■□□□ 1.45
HMGB3-205ENST00000455596 IKBKEQ14164 716 aa24.14■■□□□ 1.45
HMGB3-205ENST00000455596 MAFAQ8NHW3 353 aaPredicted RBP24.14■■□□□ 1.45
HMGB3-205ENST00000455596 PCYT2Q99447 389 aa24.14■■□□□ 1.45
HMGB3-205ENST00000455596 KIF28PB7ZC32 967 aa24.13■■□□□ 1.45
HMGB3-205ENST00000455596 DDX39AO00148 427 aaKnown RBP24.13■■□□□ 1.45
HMGB3-205ENST00000455596 GRIK4Q16099 956 aa24.13■■□□□ 1.45
HMGB3-205ENST00000455596 PPP2R2DQ66LE6 453 aa24.13■■□□□ 1.45
HMGB3-205ENST00000455596 HERC6Q8IVU3 1022 aa24.13■■□□□ 1.45
HMGB3-205ENST00000455596 TNPO1Q92973 898 aaKnown RBP24.13■■□□□ 1.45
HMGB3-205ENST00000455596 GAS2L1Q99501 681 aaPredicted RBP24.13■■□□□ 1.45
HMGB3-205ENST00000455596 SLKQ9H2G2 1235 aaPredicted RBP24.13■■□□□ 1.45
HMGB3-205ENST00000455596 IPO5O00410 1097 aaKnown RBP24.12■■□□□ 1.45
HMGB3-205ENST00000455596 ATG7O95352 703 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms