RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CCDC12Q8WUD4 166 aaPredicted RBP13.77□□□□□ -0.21
USP40-210ENST00000454354 PGBD1Q96JS3 809 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 RNF26Q9BY78 433 aaPredicted RBP13.77□□□□□ -0.21
USP40-210ENST00000454354 ZMYND12Q9H0C1 365 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 RNPEPQ9H4A4 650 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 YBX2Q9Y2T7 364 aaKnown RBP13.77□□□□□ -0.21
USP40-210ENST00000454354 PCDHA11Q9Y5I1 949 aa13.77□□□□□ -0.21
USP40-210ENST00000454354 GSTTP1A0A1W2PQM5 241 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 CAND2O75155 1236 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 FOSL2P15408 326 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 PDIA3P30101 505 aaKnown RBP13.76□□□□□ -0.21
USP40-210ENST00000454354 TCF7P36402 384 aaPredicted RBP13.76□□□□□ -0.21
USP40-210ENST00000454354 ADAM17P78536 824 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 SP4Q02446 784 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 MBTPS1Q14703 1052 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 CEP55Q53EZ4 464 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 ZNF618Q5T7W0 954 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 MCTP2Q6DN12 878 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 CNKSR3Q6P9H4 555 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 SLC17A8Q8NDX2 589 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 CRYGNQ8WXF5 182 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 SEPT1Q8WYJ6 367 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 ATP6V0A1Q93050 837 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 FTOQ9C0B1 505 aaKnown RBP eCLIP13.76□□□□□ -0.21
USP40-210ENST00000454354 KCNH7Q9NS40 1196 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 TMEM260Q9NX78 707 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 CYP46A1Q9Y6A2 500 aa13.76□□□□□ -0.21
USP40-210ENST00000454354 EVPLQ92817 2033 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 NRCAMQ92823 1304 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 MEIS1O00470 390 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 TREHO43280 583 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 GNAT1P11488 350 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 ARHGAP4P98171 946 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 UTP14CQ5TAP6 766 aaKnown RBP13.75□□□□□ -0.21
USP40-210ENST00000454354 NIPA1Q7RTP0 329 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 MAFAQ8NHW3 353 aaPredicted RBP13.75□□□□□ -0.21
USP40-210ENST00000454354 CYP2W1Q8TAV3 490 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 LMBR1Q8WVP7 490 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 PHKBQ93100 1093 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 NKX2-4Q9H2Z4 354 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 SLC28A3Q9HAS3 691 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 C6orf50Q9HD87 102 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 JPH1Q9HDC5 661 aaPredicted RBP13.75□□□□□ -0.21
USP40-210ENST00000454354 NLRC5Q86WI3 1866 aa13.75□□□□□ -0.21
USP40-210ENST00000454354 LGR5O75473 907 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 CYP3A4P08684 503 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 THPOP40225 353 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 RABGGTBP53611 331 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 WDR5P61964 334 aaKnown RBP13.74□□□□□ -0.21
USP40-210ENST00000454354 ITGB3BPQ13352 177 aaPredicted RBP13.74□□□□□ -0.21
USP40-210ENST00000454354 TCTN1Q2MV58 587 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 REXO1Q8N1G1 1221 aaKnown RBP13.74□□□□□ -0.21
USP40-210ENST00000454354 CCDC148Q8NFR7 591 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 ZNF274Q96GC6 653 aaPredicted RBP13.74□□□□□ -0.21
USP40-210ENST00000454354 SMARCAD1Q9H4L7 1026 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 NCOA5Q9HCD5 579 aaKnown RBP13.74□□□□□ -0.21
USP40-210ENST00000454354 SETD4Q9NVD3 440 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 ERAP1Q9NZ08 941 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 PKD2L1Q9P0L9 805 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 SLC9A2Q9UBY0 812 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 RALGAPA2Q2PPJ7 1873 aa13.74□□□□□ -0.21
USP40-210ENST00000454354 SPTBN5Q9NRC6 3674 aaKnown RBP13.74□□□□□ -0.21
USP40-210ENST00000454354 COL4A6Q14031 1691 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 IGLV3-22A0A075B6J6 115 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 ABHD14A-ACY1A0A1B0GW23 586 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 RSPH10B2B2RC85 870 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 ADAMTS3O15072 1205 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 EFCAB14O75071 495 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 RSPH10BP0C881 870 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 ARP10275 920 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 MYOGP15173 224 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 GNA11P29992 359 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 KCNJ6P48051 423 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 AKAP17AQ02040 695 aaKnown RBP13.73□□□□□ -0.21
USP40-210ENST00000454354 MKRN4PQ13434 485 aaPredicted RBP13.73□□□□□ -0.21
USP40-210ENST00000454354 JAKMIP3Q5VZ66 844 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 HERC6Q8IVU3 1022 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 PCYT2Q99447 389 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 SDF4Q9BRK5 362 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 SLC26A6Q9BXS9 759 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 UPF3BQ9BZI7 483 aaKnown RBP13.73□□□□□ -0.21
USP40-210ENST00000454354 PRDM12Q9H4Q4 367 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 AGO4Q9HCK5 861 aaKnown RBP13.73□□□□□ -0.21
USP40-210ENST00000454354 SH3GLB2Q9NR46 395 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 VCANP13611 3396 aa13.73□□□□□ -0.21
USP40-210ENST00000454354 MBLAC1A4D2B0 266 aaPredicted RBP13.72□□□□□ -0.21
USP40-210ENST00000454354 FAM86B1E9PN63 330 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 ATG7O95352 703 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 CENPBP07199 599 aaPredicted RBP13.72□□□□□ -0.21
USP40-210ENST00000454354 FAM86B2P0C5J1 330 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 ANAPC15P60006 121 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 CCT2P78371 535 aaKnown RBP13.72□□□□□ -0.21
USP40-210ENST00000454354 PPFIA1Q13136 1202 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 FAM26DQ5JW98 314 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 PPP2R2DQ66LE6 453 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 RPAINQ86UA6 219 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 FAM177A1Q8N128 213 aaPredicted RBP13.72□□□□□ -0.21
USP40-210ENST00000454354 BICD2Q8TD16 824 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 IL17RAQ96F46 866 aa13.72□□□□□ -0.21
USP40-210ENST00000454354 GAS2L1Q99501 681 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms