RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 CCNE2O96020 404 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 U2AF2P26368 475 aaKnown RBP eCLIP16.28■□□□□ 0.2
COL3A1-203ENST00000450867 GJB2P29033 226 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 ACTR2P61160 394 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 MFSD10Q14728 455 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 KIAA0753Q2KHM9 967 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 ZNF746Q6NUN9 644 aaPredicted RBP16.28■□□□□ 0.2
COL3A1-203ENST00000450867 B3GNT9Q6UX72 402 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 ETNPPLQ8TBG4 499 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 INTS4Q96HW7 963 aaKnown RBP16.28■□□□□ 0.2
COL3A1-203ENST00000450867 TUT1Q9H6E5 874 aaKnown RBP16.28■□□□□ 0.2
COL3A1-203ENST00000450867 KCNMB3Q9NPA1 279 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 PKD2L1Q9P0L9 805 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 TRIOBPQ9H2D6 2365 aa16.28■□□□□ 0.2
COL3A1-203ENST00000450867 TRIM43BA6NCK2 446 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 TBX3O15119 743 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 B4GALT4O60513 344 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 PSMD10O75832 226 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 KRT76Q01546 638 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 GUCY1B3Q02153 619 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 LETM2Q2VYF4 491 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 ABHD15Q6UXT9 468 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 TRIM43Q96BQ3 446 aaPredicted RBP16.27■□□□□ 0.2
COL3A1-203ENST00000450867 CTAGE1Q96RT6 745 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 PCYT2Q99447 389 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 PRO3102Q9H379 93 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 DDX25Q9UHL0 483 aaKnown RBP16.27■□□□□ 0.2
COL3A1-203ENST00000450867 GTF2IRD1Q9UHL9 959 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 ZNF215Q9UL58 517 aaPredicted RBP16.27■□□□□ 0.2
COL3A1-203ENST00000450867 SMC3Q9UQE7 1217 aa16.27■□□□□ 0.2
COL3A1-203ENST00000450867 SLC37A4O43826 429 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 SUPT20HL2P0C7V6 817 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 FOSBP53539 338 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 SP4Q02446 784 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 SH3RF1Q7Z6J0 888 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 TRIM50Q86XT4 487 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 NOSTRINQ8IVI9 506 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 SMAP1Q8IYB5 467 aaPredicted RBP16.26■□□□□ 0.19
COL3A1-203ENST00000450867 AFAP1L1Q8TED9 768 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 GDF15Q99988 308 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 TRPV6Q9H1D0 765 aa16.26■□□□□ 0.19
COL3A1-203ENST00000450867 ZMYND8Q9ULU4 1186 aaPredicted RBP16.26■□□□□ 0.19
COL3A1-203ENST00000450867 SLC26A2P50443 739 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 RBL2Q08999 1139 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 ORC2Q13416 577 aaPredicted RBP16.25■□□□□ 0.19
COL3A1-203ENST00000450867 PLPPR4Q7Z2D5 763 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 RDM1Q8NG50 284 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 FAM20AQ96MK3 541 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 SMARCAD1Q9H4L7 1026 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 TMEM39AQ9NV64 488 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 ERAP1Q9NZ08 941 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 HDAC6Q9UBN7 1215 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 PRKAG2Q9UGJ0 569 aa16.25■□□□□ 0.19
COL3A1-203ENST00000450867 SCN5AQ14524 2016 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 KIF28PB7ZC32 967 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 CCNT1O60563 726 aaKnown RBP16.24■□□□□ 0.19
COL3A1-203ENST00000450867 SYN1P17600 705 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 BMP8BP34820 402 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 TRAPPC10P48553 1259 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 ADAM17P78536 824 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 LRCH2Q5VUJ6 765 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 GDF6Q6KF10 455 aaPredicted RBP16.24■□□□□ 0.19
COL3A1-203ENST00000450867 C7orf31Q8N865 590 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 HAS1Q92839 578 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 NOC4LQ9BVI4 516 aaKnown RBP16.24■□□□□ 0.19
COL3A1-203ENST00000450867 TEKT3Q9BXF9 490 aa16.24■□□□□ 0.19
COL3A1-203ENST00000450867 TRMT13Q9NUP7 481 aaKnown RBP16.24■□□□□ 0.19
COL3A1-203ENST00000450867 EVPLQ92817 2033 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 WDR64B1ANS9 1081 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 WNT7AO00755 349 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 GAS7O60861 476 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 TIMP1P01033 207 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 SMIM10L2AP0DMW4 78 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 SMIM10L2BP0DMW5 78 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 ITGB8P26012 769 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 SFNP31947 248 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 MAGEA10P43363 369 aaPredicted RBP16.23■□□□□ 0.19
COL3A1-203ENST00000450867 JAK3P52333 1124 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 HIC1Q14526 733 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 FAM47CQ5HY64 1035 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 UTP14CQ5TAP6 766 aaKnown RBP16.23■□□□□ 0.19
COL3A1-203ENST00000450867 POTEDQ86YR6 584 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 CCDC60Q8IWA6 550 aaPredicted RBP16.23■□□□□ 0.19
COL3A1-203ENST00000450867 RNPEPQ9H4A4 650 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 AZI2Q9H6S1 392 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 PRDM5Q9NQX1 630 aaPredicted RBP16.23■□□□□ 0.19
COL3A1-203ENST00000450867 VAV3Q9UKW4 847 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 PCDHA10Q9Y5I2 948 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 MAFBQ9Y5Q3 323 aaPredicted RBP16.23■□□□□ 0.19
COL3A1-203ENST00000450867 MYH15Q9Y2K3 1946 aa16.23■□□□□ 0.19
COL3A1-203ENST00000450867 IGSF9BQ9UPX0 1349 aa16.22■□□□□ 0.19
COL3A1-203ENST00000450867 SIP14410 1827 aa16.22■□□□□ 0.19
COL3A1-203ENST00000450867 DDX39AO00148 427 aaKnown RBP16.22■□□□□ 0.19
COL3A1-203ENST00000450867 PITPNM1O00562 1244 aa16.22■□□□□ 0.19
COL3A1-203ENST00000450867 PDCP20941 246 aa16.22■□□□□ 0.19
COL3A1-203ENST00000450867 STAT5BP51692 787 aa16.22■□□□□ 0.19
COL3A1-203ENST00000450867 PPP2R5CQ13362 524 aa16.22■□□□□ 0.19
COL3A1-203ENST00000450867 PTGISQ16647 500 aa16.22■□□□□ 0.19
COL3A1-203ENST00000450867 FAM160B1Q5W0V3 765 aa16.22■□□□□ 0.19
COL3A1-203ENST00000450867 MFSD5Q6N075 450 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms