RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 PTPN11Q06124 597 aaPredicted RBP21.17■□□□□ 0.98
SHH-204ENST00000441114 EARS2Q5JPH6 523 aaKnown RBP21.17■□□□□ 0.98
SHH-204ENST00000441114 TBX21Q9UL17 535 aa21.17■□□□□ 0.98
SHH-204ENST00000441114 NOD1Q9Y239 953 aa21.17■□□□□ 0.98
SHH-204ENST00000441114 TRIP12Q14669 1992 aaPredicted RBP21.16■□□□□ 0.98
SHH-204ENST00000441114 ACTR2P61160 394 aa21.16■□□□□ 0.98
SHH-204ENST00000441114 SAFBQ15424 915 aaKnown RBP eCLIP21.16■□□□□ 0.98
SHH-204ENST00000441114 GDF6Q6KF10 455 aaPredicted RBP21.16■□□□□ 0.98
SHH-204ENST00000441114 NEK8Q86SG6 692 aa21.16■□□□□ 0.98
SHH-204ENST00000441114 LENG9Q96B70 501 aa21.16■□□□□ 0.98
SHH-204ENST00000441114 CEP290O15078 2479 aa21.15■□□□□ 0.98
SHH-204ENST00000441114 MSH4O15457 936 aa21.15■□□□□ 0.98
SHH-204ENST00000441114 SUPT20HL2P0C7V6 817 aa21.15■□□□□ 0.98
SHH-204ENST00000441114 MARK3P27448 753 aa21.15■□□□□ 0.98
SHH-204ENST00000441114 PTGISQ16647 500 aa21.15■□□□□ 0.98
SHH-204ENST00000441114 GLG1Q92896 1179 aa21.15■□□□□ 0.98
SHH-204ENST00000441114 GJA10Q969M2 543 aa21.15■□□□□ 0.98
SHH-204ENST00000441114 GDF15Q99988 308 aa21.15■□□□□ 0.98
SHH-204ENST00000441114 UBE2OQ9C0C9 1292 aaKnown RBP21.15■□□□□ 0.98
SHH-204ENST00000441114 ZNF215Q9UL58 517 aaPredicted RBP21.15■□□□□ 0.98
SHH-204ENST00000441114 KAT6AQ92794 2004 aa21.14■□□□□ 0.98
SHH-204ENST00000441114 DHX15O43143 795 aaKnown RBP21.14■□□□□ 0.97
SHH-204ENST00000441114 CCNT1O60563 726 aaKnown RBP21.14■□□□□ 0.97
SHH-204ENST00000441114 CCNE2O96020 404 aa21.14■□□□□ 0.97
SHH-204ENST00000441114 TIMP1P01033 207 aa21.14■□□□□ 0.97
SHH-204ENST00000441114 CYP2C18P33260 490 aa21.14■□□□□ 0.97
SHH-204ENST00000441114 ZNF200P98182 395 aaPredicted RBP21.14■□□□□ 0.97
SHH-204ENST00000441114 TNFRSF25Q93038 417 aa21.14■□□□□ 0.97
SHH-204ENST00000441114 HIPK3Q9H422 1215 aa21.14■□□□□ 0.97
SHH-204ENST00000441114 TBC1D22BQ9NU19 505 aa21.14■□□□□ 0.97
SHH-204ENST00000441114 DDX25Q9UHL0 483 aaKnown RBP21.14■□□□□ 0.97
SHH-204ENST00000441114 GTF2IRD1Q9UHL9 959 aa21.14■□□□□ 0.97
SHH-204ENST00000441114 TCEAL9Q9UHQ7 104 aa21.14■□□□□ 0.97
SHH-204ENST00000441114 UMODL1Q5DID0 1318 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 CYP3A7-CYP3A51PA0A087WV96 503 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 SMIM10L2AP0DMW4 78 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 SMIM10L2BP0DMW5 78 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 CYP3A7P24462 503 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 GJB2P29033 226 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 GNL2Q13823 731 aaKnown RBP21.13■□□□□ 0.97
SHH-204ENST00000441114 Q4G0T1 1027 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 SESTD1Q86VW0 696 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 RNPEPQ9H4A4 650 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 SMARCAD1Q9H4L7 1026 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 AZI2Q9H6S1 392 aa21.13■□□□□ 0.97
SHH-204ENST00000441114 BACH1O14867 736 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 SLC37A4O43826 429 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 CCL23P55773 120 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 HIC1Q14526 733 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 LRCH2Q5VUJ6 765 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 MOXD1Q6UVY6 613 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 FBXO18Q8NFZ0 1043 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 PCYT2Q99447 389 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 NOC4LQ9BVI4 516 aaKnown RBP21.12■□□□□ 0.97
SHH-204ENST00000441114 SMC3Q9UQE7 1217 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 SAMM50Q9Y512 469 aa21.12■□□□□ 0.97
SHH-204ENST00000441114 C17orf102A2RUQ5 167 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 CHMP2AO43633 222 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 GAS7O60861 476 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 ATP2B1P20020 1258 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 MIS18BP1Q6P0N0 1132 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 SLC5A5Q92911 643 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 MBOAT7Q96N66 472 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 TEKT3Q9BXF9 490 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 SETD4Q9NVD3 440 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 ERAP1Q9NZ08 941 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 KIF3AQ9Y496 699 aa21.11■□□□□ 0.97
SHH-204ENST00000441114 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.11■□□□□ 0.97
SHH-204ENST00000441114 MYH9P35579 1960 aaKnown RBP21.1■□□□□ 0.97
SHH-204ENST00000441114 EMSYQ7Z589 1322 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 WDR81Q562E7 1941 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 MARCH6O60337 910 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 LGR5O75473 907 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 ATG7O95352 703 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 BMP8BP34820 402 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 STAT5BP51692 787 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 KRT76Q01546 638 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 FPGSQ05932 587 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 MFSD5Q6N075 450 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 ZNF746Q6NUN9 644 aaPredicted RBP21.1■□□□□ 0.97
SHH-204ENST00000441114 SWSAP1Q6NVH7 229 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 ABHD15Q6UXT9 468 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 TMEM199Q8N511 208 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 ATP6V0A1Q93050 837 aa21.1■□□□□ 0.97
SHH-204ENST00000441114 NAP1L4Q99733 375 aaKnown RBP21.1■□□□□ 0.97
SHH-204ENST00000441114 CSF2RAP15509 400 aa21.09■□□□□ 0.97
SHH-204ENST00000441114 GCFC2P16383 781 aaKnown RBP21.09■□□□□ 0.97
SHH-204ENST00000441114 FAM160B1Q5W0V3 765 aa21.09■□□□□ 0.97
SHH-204ENST00000441114 PPP4R3AQ6IN85 833 aa21.09■□□□□ 0.97
SHH-204ENST00000441114 RETREG2Q8NC44 543 aa21.09■□□□□ 0.97
SHH-204ENST00000441114 SCLYQ96I15 445 aa21.09■□□□□ 0.97
SHH-204ENST00000441114 RIT2Q99578 217 aa21.09■□□□□ 0.97
SHH-204ENST00000441114 PRO3102Q9H379 93 aa21.09■□□□□ 0.97
SHH-204ENST00000441114 UNC45AQ9H3U1 944 aa21.09■□□□□ 0.97
SHH-204ENST00000441114 ZNF302Q9NR11 478 aa21.09■□□□□ 0.97
SHH-204ENST00000441114 TREHO43280 583 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 PSAPP07602 524 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 IGBP1P78318 339 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 BFSP2Q13515 415 aa21.08■□□□□ 0.97
SHH-204ENST00000441114 SCN5AQ14524 2016 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms