RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 MLXIPQ9HAP2 919 aa8.98□□□□□ -0.97
VPS50-204ENST00000438395 SEC63Q9UGP8 760 aaKnown RBP8.98□□□□□ -0.97
VPS50-204ENST00000438395 LCE2BO14633 110 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 SORBS3O60504 671 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 PPFIA4O75335 1185 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 GGPS1O95749 300 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 F2P00734 622 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 CD46P15529 392 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 KIF5BP33176 963 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 SLC19A1P41440 591 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 PTK7Q13308 1070 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 IKBKEQ14164 716 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 GRM4Q14833 912 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 CNKSR3Q6P9H4 555 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 LIAT1Q6ZQX7 453 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 STAG2Q8N3U4 1231 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 NCOA7Q8NI08 942 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 CTCFLQ8NI51 663 aaPredicted RBP8.97□□□□□ -0.97
VPS50-204ENST00000438395 CUL5Q93034 780 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 PDCD2LQ9BRP1 358 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 HDAC6Q9UBN7 1215 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 GTF2IRD1Q9UHL9 959 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 DDX41Q9UJV9 622 aaKnown RBP8.97□□□□□ -0.97
VPS50-204ENST00000438395 EMSYQ7Z589 1322 aa8.97□□□□□ -0.97
VPS50-204ENST00000438395 LAMA4Q16363 1823 aa8.96□□□□□ -0.97
VPS50-204ENST00000438395 LCTP09848 1927 aa8.96□□□□□ -0.97
VPS50-204ENST00000438395 CHD7Q9P2D1 2997 aa8.96□□□□□ -0.97
VPS50-204ENST00000438395 SCN10AQ9Y5Y9 1956 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 PNMA6FA0A0J9YX94 578 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 ABHD14A-ACY1A0A1B0GW23 586 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 TGFB3P10600 412 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 CKBP12277 381 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 UBA1P22314 1058 aaKnown RBP8.96□□□□□ -0.98
VPS50-204ENST00000438395 WDR5P61964 334 aaKnown RBP8.96□□□□□ -0.98
VPS50-204ENST00000438395 TAP1Q03518 808 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 PGM5Q15124 567 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 SEC23AQ15436 765 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 CELF3Q5SZQ8 465 aaKnown RBP8.96□□□□□ -0.98
VPS50-204ENST00000438395 CASC1Q6TDU7 716 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 RNF19BQ6ZMZ0 732 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 NFXL1Q6ZNB6 911 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 STOX1Q6ZVD7 989 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 CYB5R4Q7L1T6 521 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 PIBF1Q8WXW3 757 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 KAT2BQ92831 832 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 HLA-CQ95604 372 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 THAP11Q96EK4 314 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 RRP36Q96EU6 259 aaKnown RBP8.96□□□□□ -0.98
VPS50-204ENST00000438395 PIGSQ96S52 555 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 PRDM9Q9NQV7 894 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 MAD2L2Q9UI95 211 aa8.96□□□□□ -0.98
VPS50-204ENST00000438395 ZNF215Q9UL58 517 aaPredicted RBP8.96□□□□□ -0.98
VPS50-204ENST00000438395 C17orf102A2RUQ5 167 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 PALM3A6NDB9 673 aaPredicted RBP8.95□□□□□ -0.98
VPS50-204ENST00000438395 PPP1R11O60927 126 aaPredicted RBP8.95□□□□□ -0.98
VPS50-204ENST00000438395 STAM2O75886 525 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 DDAH1O94760 285 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 AMHP03971 560 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 CYP21A2P08686 494 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 GNAT1P11488 350 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 GSPT1P15170 499 aaKnown RBP8.95□□□□□ -0.98
VPS50-204ENST00000438395 CHMLP26374 656 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 THPOP40225 353 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 GHRHRQ02643 423 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 RBL2Q08999 1139 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 NEDD9Q14511 834 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 MYSM1Q5VVJ2 828 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 FAM117BQ6P1L5 589 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 VSIG10LQ86VR7 867 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 IL31RAQ8NI17 732 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 SMARCC2Q8TAQ2 1214 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 DHX38Q92620 1227 aaKnown RBP8.95□□□□□ -0.98
VPS50-204ENST00000438395 VWCEQ96DN2 955 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 MTMR8Q96EF0 704 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 MTUS1Q9ULD2 1270 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 COG5Q9UP83 839 aa8.95□□□□□ -0.98
VPS50-204ENST00000438395 CCDC69A6NI79 296 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 RSPH10B2B2RC85 870 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 E7EWF7 191 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 H3BRB1 525 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 RFXAPO00287 272 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 OPLAHO14841 1288 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 FIBPO43427 364 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 LGR5O75473 907 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 CXCL10P02778 98 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 RSPH10BP0C881 870 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 HOXD8P13378 290 aaPredicted RBP8.94□□□□□ -0.98
VPS50-204ENST00000438395 GNAQP50148 359 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 DEFB103AP81534 67 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 SP4Q02446 784 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 HSDL1Q3SXM5 330 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 ZNF618Q5T7W0 954 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 TRIM67Q6ZTA4 783 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 MYOCDQ8IZQ8 938 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 FAM160A2Q8N612 972 aaPredicted RBP8.94□□□□□ -0.98
VPS50-204ENST00000438395 ATP6V0A1Q93050 837 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 TGS1Q96RS0 853 aaKnown RBP8.94□□□□□ -0.98
VPS50-204ENST00000438395 RAD9AQ99638 391 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 LZTS2Q9BRK4 669 aa8.94□□□□□ -0.98
VPS50-204ENST00000438395 REPIN1Q9BWE0 567 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms