RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 KIAA1024Q9UPX6 916 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 PCDHGC5Q9Y5F6 944 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 HLA-DOAP06340 250 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 CXCR5P32302 372 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 EPS15P42566 896 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 EIF6P56537 245 aaKnown RBP12.43□□□□□ -0.42
USP4-205ENST00000431357 GTF2IP78347 998 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 PAK2Q13177 524 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 ADAM9Q13443 819 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 DNAJC21Q5F1R6 531 aaKnown RBP12.43□□□□□ -0.42
USP4-205ENST00000431357 GPBP1Q86WP2 473 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 C10orf67Q8IYJ2 551 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 KCNMB3Q9NPA1 279 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 RBM12Q9NTZ6 932 aaKnown RBP12.43□□□□□ -0.42
USP4-205ENST00000431357 BZW2Q9Y6E2 419 aaKnown RBP12.43□□□□□ -0.42
USP4-205ENST00000431357 E9PMD0 336 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 C6orf229H3BNL8 230 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 PALMO75781 387 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 SERPINB2P05120 415 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 CYP11B2P19099 503 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 ANXA13P27216 316 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 SLC7A5Q01650 507 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 KLHL30Q0D2K2 578 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 AP3B2Q13367 1082 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 IFI16Q16666 785 aaKnown RBP12.42□□□□□ -0.42
USP4-205ENST00000431357 MEI1Q5TIA1 1274 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 TTBK2Q6IQ55 1244 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 FOXR1Q6PIV2 292 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 FRMD5Q7Z6J6 570 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 SCFD1Q8WVM8 642 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.42□□□□□ -0.42
USP4-205ENST00000431357 TBC1D5Q92609 795 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 PLCB1Q9NQ66 1216 aa12.42□□□□□ -0.42
USP4-205ENST00000431357 USP17L10C9JJH3 530 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 TBX3O15119 743 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 KRT18P05783 430 aaKnown RBP12.41□□□□□ -0.42
USP4-205ENST00000431357 SHMT1P34896 483 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 MAGEA9P43362 315 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 IRAK1P51617 712 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 RAPGEF1Q13905 1077 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 NELFCDQ8IXH7 590 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 MREGQ8N565 214 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 ERMNQ8TAM6 284 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 PSMB7Q99436 277 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 CAPS2Q9BXY5 557 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 GANQ9H2C0 597 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 ATP8B3O60423 1300 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 ATAD5Q96QE3 1844 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 MYCNP04198 464 aaPredicted RBP12.41□□□□□ -0.42
USP4-205ENST00000431357 KLRC1P26715 233 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 CORO7P57737 925 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 TNNC1P63316 161 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 SKOR1P84550 965 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 SP8Q8IXZ3 490 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 EIF1ADQ8N9N8 165 aaKnown RBP12.41□□□□□ -0.42
USP4-205ENST00000431357 DCAF4Q8WV16 495 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 TAF4BQ92750 862 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.41□□□□□ -0.42
USP4-205ENST00000431357 MXD3Q9BW11 206 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 EHD4Q9H223 541 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 DHX36Q9H2U1 1008 aaKnown RBP12.41□□□□□ -0.42
USP4-205ENST00000431357 USP40Q9NVE5 1235 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 TRAF3IP3Q9Y228 551 aa12.41□□□□□ -0.42
USP4-205ENST00000431357 POTEB3A0JP26 581 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 POTECB2RU33 542 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 TRIM66O15016 1216 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 ERCC3P19447 782 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 NOP2P46087 812 aaKnown RBP12.4□□□□□ -0.42
USP4-205ENST00000431357 GTF2A1P52655 376 aaPredicted RBP12.4□□□□□ -0.42
USP4-205ENST00000431357 SLC12A3P55017 1021 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 KCNH2Q12809 1159 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 KIAA0753Q2KHM9 967 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 POTEBQ6S5H4 581 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 KCTD17Q8N5Z5 321 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 C1orf131Q8NDD1 294 aaKnown RBP12.4□□□□□ -0.42
USP4-205ENST00000431357 WHAMMQ8TF30 809 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 C8orf37Q96NL8 207 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 ANO3Q9BYT9 981 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 DDX4Q9NQI0 724 aaKnown RBP12.4□□□□□ -0.42
USP4-205ENST00000431357 SMARCAL1Q9NZC9 954 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 EHD2Q9NZN4 543 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 TBC1D7Q9P0N9 293 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 MYH10P35580 1976 aa12.4□□□□□ -0.42
USP4-205ENST00000431357 A0A087X0T9 212 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 KLRG2A4D1S0 409 aaPredicted RBP12.4□□□□□ -0.43
USP4-205ENST00000431357 CALUO43852 315 aaPredicted RBP12.4□□□□□ -0.43
USP4-205ENST00000431357 HEXIM1O94992 359 aaKnown RBP12.4□□□□□ -0.43
USP4-205ENST00000431357 FAM228BP0C875 321 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 GYS1P13807 737 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 SLC16A2P36021 539 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 CDC37Q16543 378 aaPredicted RBP12.4□□□□□ -0.43
USP4-205ENST00000431357 CFAP58Q5T655 872 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 HHIPL2Q6UWX4 724 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 KCTD1Q719H9 257 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 CD302Q8IX05 232 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 TSEN2Q8NCE0 465 aaKnown RBP12.4□□□□□ -0.43
USP4-205ENST00000431357 MKL1Q969V6 931 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 MS4A14Q96JA4 679 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 PBKQ96KB5 322 aa12.4□□□□□ -0.43
USP4-205ENST00000431357 FGFBP2Q9BYJ0 223 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms