RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 EARS2Q5JPH6 523 aaKnown RBP21.17■□□□□ 0.98
SHH-202ENST00000430104 TBX21Q9UL17 535 aa21.17■□□□□ 0.98
SHH-202ENST00000430104 NOD1Q9Y239 953 aa21.17■□□□□ 0.98
SHH-202ENST00000430104 TRIP12Q14669 1992 aaPredicted RBP21.16■□□□□ 0.98
SHH-202ENST00000430104 ACTR2P61160 394 aa21.16■□□□□ 0.98
SHH-202ENST00000430104 SAFBQ15424 915 aaKnown RBP eCLIP21.16■□□□□ 0.98
SHH-202ENST00000430104 GDF6Q6KF10 455 aaPredicted RBP21.16■□□□□ 0.98
SHH-202ENST00000430104 NEK8Q86SG6 692 aa21.16■□□□□ 0.98
SHH-202ENST00000430104 LENG9Q96B70 501 aa21.16■□□□□ 0.98
SHH-202ENST00000430104 CEP290O15078 2479 aa21.15■□□□□ 0.98
SHH-202ENST00000430104 MSH4O15457 936 aa21.15■□□□□ 0.98
SHH-202ENST00000430104 SUPT20HL2P0C7V6 817 aa21.15■□□□□ 0.98
SHH-202ENST00000430104 MARK3P27448 753 aa21.15■□□□□ 0.98
SHH-202ENST00000430104 PTGISQ16647 500 aa21.15■□□□□ 0.98
SHH-202ENST00000430104 GLG1Q92896 1179 aa21.15■□□□□ 0.98
SHH-202ENST00000430104 GJA10Q969M2 543 aa21.15■□□□□ 0.98
SHH-202ENST00000430104 GDF15Q99988 308 aa21.15■□□□□ 0.98
SHH-202ENST00000430104 UBE2OQ9C0C9 1292 aaKnown RBP21.15■□□□□ 0.98
SHH-202ENST00000430104 ZNF215Q9UL58 517 aaPredicted RBP21.15■□□□□ 0.98
SHH-202ENST00000430104 KAT6AQ92794 2004 aa21.14■□□□□ 0.98
SHH-202ENST00000430104 DHX15O43143 795 aaKnown RBP21.14■□□□□ 0.97
SHH-202ENST00000430104 CCNT1O60563 726 aaKnown RBP21.14■□□□□ 0.97
SHH-202ENST00000430104 CCNE2O96020 404 aa21.14■□□□□ 0.97
SHH-202ENST00000430104 TIMP1P01033 207 aa21.14■□□□□ 0.97
SHH-202ENST00000430104 CYP2C18P33260 490 aa21.14■□□□□ 0.97
SHH-202ENST00000430104 ZNF200P98182 395 aaPredicted RBP21.14■□□□□ 0.97
SHH-202ENST00000430104 TNFRSF25Q93038 417 aa21.14■□□□□ 0.97
SHH-202ENST00000430104 HIPK3Q9H422 1215 aa21.14■□□□□ 0.97
SHH-202ENST00000430104 TBC1D22BQ9NU19 505 aa21.14■□□□□ 0.97
SHH-202ENST00000430104 DDX25Q9UHL0 483 aaKnown RBP21.14■□□□□ 0.97
SHH-202ENST00000430104 GTF2IRD1Q9UHL9 959 aa21.14■□□□□ 0.97
SHH-202ENST00000430104 TCEAL9Q9UHQ7 104 aa21.14■□□□□ 0.97
SHH-202ENST00000430104 UMODL1Q5DID0 1318 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 CYP3A7-CYP3A51PA0A087WV96 503 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 SMIM10L2AP0DMW4 78 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 SMIM10L2BP0DMW5 78 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 CYP3A7P24462 503 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 GJB2P29033 226 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 GNL2Q13823 731 aaKnown RBP21.13■□□□□ 0.97
SHH-202ENST00000430104 Q4G0T1 1027 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 SESTD1Q86VW0 696 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 RNPEPQ9H4A4 650 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 SMARCAD1Q9H4L7 1026 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 AZI2Q9H6S1 392 aa21.13■□□□□ 0.97
SHH-202ENST00000430104 BACH1O14867 736 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 SLC37A4O43826 429 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 CCL23P55773 120 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 HIC1Q14526 733 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 LRCH2Q5VUJ6 765 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 MOXD1Q6UVY6 613 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 FBXO18Q8NFZ0 1043 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 PCYT2Q99447 389 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 NOC4LQ9BVI4 516 aaKnown RBP21.12■□□□□ 0.97
SHH-202ENST00000430104 SMC3Q9UQE7 1217 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 SAMM50Q9Y512 469 aa21.12■□□□□ 0.97
SHH-202ENST00000430104 C17orf102A2RUQ5 167 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 CHMP2AO43633 222 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 GAS7O60861 476 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 ATP2B1P20020 1258 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 MIS18BP1Q6P0N0 1132 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 SLC5A5Q92911 643 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 MBOAT7Q96N66 472 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 TEKT3Q9BXF9 490 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 SETD4Q9NVD3 440 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 ERAP1Q9NZ08 941 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 KIF3AQ9Y496 699 aa21.11■□□□□ 0.97
SHH-202ENST00000430104 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.11■□□□□ 0.97
SHH-202ENST00000430104 MYH9P35579 1960 aaKnown RBP21.1■□□□□ 0.97
SHH-202ENST00000430104 EMSYQ7Z589 1322 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 WDR81Q562E7 1941 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 MARCH6O60337 910 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 LGR5O75473 907 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 ATG7O95352 703 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 BMP8BP34820 402 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 STAT5BP51692 787 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 KRT76Q01546 638 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 FPGSQ05932 587 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 MFSD5Q6N075 450 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 ZNF746Q6NUN9 644 aaPredicted RBP21.1■□□□□ 0.97
SHH-202ENST00000430104 SWSAP1Q6NVH7 229 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 ABHD15Q6UXT9 468 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 TMEM199Q8N511 208 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 ATP6V0A1Q93050 837 aa21.1■□□□□ 0.97
SHH-202ENST00000430104 NAP1L4Q99733 375 aaKnown RBP21.1■□□□□ 0.97
SHH-202ENST00000430104 CSF2RAP15509 400 aa21.09■□□□□ 0.97
SHH-202ENST00000430104 GCFC2P16383 781 aaKnown RBP21.09■□□□□ 0.97
SHH-202ENST00000430104 FAM160B1Q5W0V3 765 aa21.09■□□□□ 0.97
SHH-202ENST00000430104 PPP4R3AQ6IN85 833 aa21.09■□□□□ 0.97
SHH-202ENST00000430104 RETREG2Q8NC44 543 aa21.09■□□□□ 0.97
SHH-202ENST00000430104 SCLYQ96I15 445 aa21.09■□□□□ 0.97
SHH-202ENST00000430104 RIT2Q99578 217 aa21.09■□□□□ 0.97
SHH-202ENST00000430104 PRO3102Q9H379 93 aa21.09■□□□□ 0.97
SHH-202ENST00000430104 UNC45AQ9H3U1 944 aa21.09■□□□□ 0.97
SHH-202ENST00000430104 ZNF302Q9NR11 478 aa21.09■□□□□ 0.97
SHH-202ENST00000430104 TREHO43280 583 aa21.08■□□□□ 0.97
SHH-202ENST00000430104 PSAPP07602 524 aa21.08■□□□□ 0.97
SHH-202ENST00000430104 IGBP1P78318 339 aa21.08■□□□□ 0.97
SHH-202ENST00000430104 BFSP2Q13515 415 aa21.08■□□□□ 0.97
SHH-202ENST00000430104 SCN5AQ14524 2016 aa21.08■□□□□ 0.97
SHH-202ENST00000430104 TRMT1LQ7Z2T5 733 aaKnown RBP21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms