RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 PCDHA12Q9UN75 941 aa15.77■□□□□ 0.11
LIG1-202ENST00000427526 ATF5Q9Y2D1 282 aaPredicted RBP15.77■□□□□ 0.11
LIG1-202ENST00000427526 MYH10P35580 1976 aa15.77■□□□□ 0.11
LIG1-202ENST00000427526 TLR2O60603 784 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 IVLP07476 585 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 KCNA3P22001 575 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 SF3B2Q13435 895 aaKnown RBP15.76■□□□□ 0.11
LIG1-202ENST00000427526 CERKLQ49MI3 558 aaPredicted RBP15.76■□□□□ 0.11
LIG1-202ENST00000427526 CACNA2D4Q7Z3S7 1137 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 FGFBP2Q9BYJ0 223 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 ZNF277Q9NRM2 450 aaPredicted RBP15.76■□□□□ 0.11
LIG1-202ENST00000427526 CEP72Q9P209 647 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 GCFC2P16383 781 aaKnown RBP15.76■□□□□ 0.11
LIG1-202ENST00000427526 BAG6P46379 1132 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 MRPL12P52815 198 aaKnown RBP15.76■□□□□ 0.11
LIG1-202ENST00000427526 MARSP56192 900 aaKnown RBP15.76■□□□□ 0.11
LIG1-202ENST00000427526 FAM26FQ5R3K3 315 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 KLHDC7AQ5VTJ3 777 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 CCDC70Q6NSX1 233 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 LRRC31Q6UY01 552 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 GPIHBP1Q8IV16 184 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 CCDC17Q96LX7 622 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 CEP63Q96MT8 703 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 MYH7BA7E2Y1 1941 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 TRAF5O00463 557 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 ZBTB5O15062 677 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 EEF2P13639 858 aaKnown RBP15.76■□□□□ 0.11
LIG1-202ENST00000427526 CXCR5P32302 372 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 SLC1A4P43007 532 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 RASSF7Q02833 373 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 ANKRD13CQ8N6S4 541 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 AFAP1L1Q8TED9 768 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 TANGO6Q9C0B7 1094 aa15.76■□□□□ 0.11
LIG1-202ENST00000427526 NUCKS1Q9H1E3 243 aaKnown RBP15.76■□□□□ 0.11
LIG1-202ENST00000427526 GDF11O95390 407 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 FAM83BQ5T0W9 1011 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 HINFPQ9BQA5 517 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 CRACR2AQ9BSW2 395 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 NT5C3AQ9H0P0 336 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 PSTPIP2Q9H939 334 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 LCMT1Q9UIC8 334 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 USP17L10C9JJH3 530 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 NCK2O43639 380 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 MMP14P50281 582 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 GPATCH4Q5T3I0 446 aaKnown RBP15.75■□□□□ 0.11
LIG1-202ENST00000427526 FOXR1Q6PIV2 292 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.75■□□□□ 0.11
LIG1-202ENST00000427526 SIAH1Q8IUQ4 282 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 TRIM59Q8IWR1 403 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 TRIM34Q9BYJ4 488 aa15.75■□□□□ 0.11
LIG1-202ENST00000427526 E9PMD0 336 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 SERPING1P05155 500 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 ZC3H3Q8IXZ2 948 aaKnown RBP15.74■□□□□ 0.11
LIG1-202ENST00000427526 NOX5Q96PH1 765 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 KCTD10Q9H3F6 313 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 NLRC4Q9NPP4 1024 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 SMARCAL1Q9NZC9 954 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 FEZ2Q9UHY8 353 aaPredicted RBP15.74■□□□□ 0.11
LIG1-202ENST00000427526 ZBTB12Q9Y330 459 aaPredicted RBP15.74■□□□□ 0.11
LIG1-202ENST00000427526 KDM3AQ9Y4C1 1321 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 JAG1P78504 1218 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 SLC9C1Q4G0N8 1177 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 CCDC40Q4G0X9 1142 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 HAUS3Q68CZ6 603 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 SRLQ86TD4 932 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 LARGE2Q8N3Y3 721 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 PSMB7Q99436 277 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 BMP2KQ9NSY1 1161 aaPredicted RBP15.74■□□□□ 0.11
LIG1-202ENST00000427526 EHD2Q9NZN4 543 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 KCNG1Q9UIX4 513 aa15.74■□□□□ 0.11
LIG1-202ENST00000427526 GNA14O95837 355 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 SFMBT2Q5VUG0 894 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 TATDN1Q6P1N9 297 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 SCFD1Q8WVM8 642 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 KIAA1024Q9UPX6 916 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 ARFGEF1Q9Y6D6 1849 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 CLRN2A0PK11 232 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 GOLGA6BA6NDN3 693 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 BUB1O43683 1085 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 PLA2G4BP0C869 781 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 SLC7A5Q01650 507 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 GOLGA6L1Q8N7Z2 621 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 KCNMB3Q9NPA1 279 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 TBC1D7Q9P0N9 293 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 GREB1LQ9C091 1923 aaPredicted RBP15.73■□□□□ 0.11
LIG1-202ENST00000427526 FRMD3A2A2Y4 597 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 TCP10L2B9ZVM9 353 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 TNFRSF8P28908 595 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 RRP1BQ14684 758 aaKnown RBP15.73■□□□□ 0.11
LIG1-202ENST00000427526 CCDC65Q8IXS2 484 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 RTKN2Q8IZC4 609 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 NAP1L4Q99733 375 aaKnown RBP15.73■□□□□ 0.11
LIG1-202ENST00000427526 KANSL2Q9H9L4 492 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 STIM2Q9P246 746 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 TSKSQ9UJT2 592 aa15.73■□□□□ 0.11
LIG1-202ENST00000427526 NPHP3-ACAD11A0A0J9YXS1 232 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 MYO1CO00159 1063 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 MARCH6O60337 910 aa15.72■□□□□ 0.11
LIG1-202ENST00000427526 NPM3O75607 178 aaKnown RBP15.72■□□□□ 0.11
LIG1-202ENST00000427526 CYP11B2P19099 503 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms