RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RALYLQ86SE5 291 aaKnown RBP9.35□□□□□ -0.91
VIM-202ENST00000421459 CCDC82Q8N4S0 544 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 SRBD1Q8N5C6 995 aaKnown RBP9.35□□□□□ -0.91
VIM-202ENST00000421459 SAMD3Q8N6K7 520 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 SMARCC2Q8TAQ2 1214 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 UIMC1Q96RL1 719 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 HCN4Q9Y3Q4 1203 aa9.35□□□□□ -0.91
VIM-202ENST00000421459 U3KPZ7 1027 aaPredicted RBP9.35□□□□□ -0.91
VIM-202ENST00000421459 POTEB3A0JP26 581 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 ERICH2A1L162 156 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 ENPP3O14638 875 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 LINC01565O15544 149 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 ITGB5P18084 799 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 CTNNB1P35222 781 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 TCF7P36402 384 aaPredicted RBP9.34□□□□□ -0.91
VIM-202ENST00000421459 LTBRP36941 435 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 IGBP1P78318 339 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 IRX6P78412 446 aaPredicted RBP9.34□□□□□ -0.91
VIM-202ENST00000421459 MGAT3Q09327 533 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 LPIN1Q14693 890 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 PTPROQ16827 1216 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 FAM26DQ5JW98 314 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 MARCH8Q5T0T0 291 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 PCNX4Q63HM2 1172 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 POTEBQ6S5H4 581 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 CATIPQ7Z7H3 387 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 MB21D2Q8IYB1 491 aaPredicted RBP9.34□□□□□ -0.91
VIM-202ENST00000421459 ZNF654Q8IZM8 581 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 FIBCD1Q8N539 461 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 NCOA7Q8NI08 942 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 DNAJB3Q8WWF6 145 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 LINC01599Q8WXQ3 324 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 IL17RAQ96F46 866 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 IGFLR1Q9H665 355 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 EHMT1Q9H9B1 1298 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 LY9Q9HBG7 655 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 CLDND1Q9NY35 253 aa9.34□□□□□ -0.91
VIM-202ENST00000421459 MYH7BA7E2Y1 1941 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 GNAT1P11488 350 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 KCNA2P16389 499 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 IBSPP21815 317 aaPredicted RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 BMPR1AP36894 532 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 GATMP50440 423 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 TMEM62Q0P6H9 643 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 HYAL1Q12794 435 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 AAMPQ13685 434 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 RPAINQ86UA6 219 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 RTN4RL1Q86UN2 441 aaPredicted RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 ALYREFQ86V81 257 aaKnown RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 TRAPPC12Q8WVT3 735 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 PABPC5Q96DU9 382 aaKnown RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 RRP36Q96EU6 259 aaKnown RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 SAMD11Q96NU1 681 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 PCYT2Q99447 389 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 LRRC2Q9BYS8 371 aa9.33□□□□□ -0.92
VIM-202ENST00000421459 NSUN3Q9H649 340 aaKnown RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 AGO3Q9H9G7 860 aaKnown RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 ALG13Q9NP73 1137 aaKnown RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 ZNF215Q9UL58 517 aaPredicted RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 RBM8AQ9Y5S9 174 aaKnown RBP9.33□□□□□ -0.92
VIM-202ENST00000421459 NRCAMQ92823 1304 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 PRR33A8MZF0 331 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 SGSM2O43147 1006 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 PRC1O43663 620 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 CAND2O75155 1236 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 STAM2O75886 525 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 DNAJB1P25685 340 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 CD52P31358 61 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 ZP2Q05996 745 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 TRAF1Q13077 416 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 PPFIA1Q13136 1202 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 CAMK1Q14012 370 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 SART3Q15020 963 aaKnown RBP9.32□□□□□ -0.92
VIM-202ENST00000421459 GRIK4Q16099 956 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 TIGD5Q53EQ6 642 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 FBXO47Q5MNV8 452 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 NLRX1Q86UT6 975 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 CYP2W1Q8TAV3 490 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 SEPT1Q8WYJ6 367 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 APBB2Q92870 758 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 MAP4K1Q92918 833 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 CUL5Q93034 780 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 PGBD1Q96JS3 809 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 SENP7Q9BQF6 1050 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 SPZ1Q9BXG8 430 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 FAM49AQ9H0Q0 323 aaPredicted RBP9.32□□□□□ -0.92
VIM-202ENST00000421459 PSTPIP2Q9H939 334 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 RC3H2Q9HBD1 1191 aaKnown RBP9.32□□□□□ -0.92
VIM-202ENST00000421459 PCDHGC5Q9Y5F6 944 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 CDY2AQ9Y6F7 541 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 TRIOO75962 3097 aa9.32□□□□□ -0.92
VIM-202ENST00000421459 SIP14410 1827 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 C19orf67A6NJJ6 358 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 C5orf67F2Z3F1 127 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 PIK3CDO00329 1044 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 SH2B2O14492 632 aaPredicted RBP9.31□□□□□ -0.92
VIM-202ENST00000421459 INSRRP14616 1297 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 IRS1P35568 1242 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 BTG3Q14201 252 aaPredicted RBP9.31□□□□□ -0.92
VIM-202ENST00000421459 COL19A1Q14993 1142 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms