RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 WASHC2CQ9Y4E1 1318 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 MYOCOSA0A1B0GUC4 107 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 CCDC66A2RUB6 948 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 ZNF891A8MT65 544 aaPredicted RBP6.31□□□□□ -1.4
VPS54-204ENST00000416400 WNT9AO14904 365 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 SGSM2O43147 1006 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 ZEB2O60315 1214 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 PARNO95453 639 aaKnown RBP6.31□□□□□ -1.4
VPS54-204ENST00000416400 NCAM1P13591 858 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 BPIP17213 487 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 IL2P60568 153 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 TMPRSS15P98073 1019 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 LHFPL2Q6ZUX7 228 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 C16orf59Q7L2K0 433 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 ZC3H18Q86VM9 953 aaKnown RBP6.31□□□□□ -1.4
VPS54-204ENST00000416400 LDHDQ86WU2 507 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 POU5F2Q8N7G0 328 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 CHST14Q8NCH0 376 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 MZB1Q8WU39 189 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 KRTAP4-7Q9BYR0 210 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 CDIP1Q9H305 208 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 SLC5A4Q9NY91 659 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 MYOTQ9UBF9 498 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 DSEQ9UL01 958 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 ZNF652Q9Y2D9 606 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 HCFC2Q9Y5Z7 792 aa6.31□□□□□ -1.4
VPS54-204ENST00000416400 NEMP1O14524 444 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 KATNA1O75449 491 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 F2P00734 622 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 PYGMP11217 842 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 DLG4P78352 724 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 DSG1Q02413 1049 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 MESP2Q0VG99 397 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 GPR19Q15760 415 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 EMC4Q5J8M3 183 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 ZNF648Q5T619 568 aaPredicted RBP6.3□□□□□ -1.4
VPS54-204ENST00000416400 ETV3LQ6ZN32 361 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 AMIGO3Q86WK7 504 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 NLGN4XQ8N0W4 816 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 NXPE1Q8N323 547 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 CISD2Q8N5K1 135 aaKnown RBP6.3□□□□□ -1.4
VPS54-204ENST00000416400 FMNL2Q96PY5 1086 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 SGPP1Q9BX95 441 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 RNF38Q9H0F5 515 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 CNTD2Q9H8S5 307 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 NGRNQ9NPE2 291 aaKnown RBP6.3□□□□□ -1.4
VPS54-204ENST00000416400 MBD1Q9UIS9 605 aaPredicted RBP6.3□□□□□ -1.4
VPS54-204ENST00000416400 IRAK3Q9Y616 596 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 PHLDB1Q86UU1 1377 aa6.3□□□□□ -1.4
VPS54-204ENST00000416400 ETV2O00321 342 aaPredicted RBP6.29□□□□□ -1.4
VPS54-204ENST00000416400 TRAF5O00463 557 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 SLC27A2O14975 620 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 N4BP3O15049 544 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 KRT15P19012 456 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 GLDCP23378 1020 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 ADCYAP1R1P41586 468 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 RAP1GAPP47736 663 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 ID4P47928 161 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 OCRLQ01968 901 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 ATG14Q6ZNE5 492 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 NOL8Q76FK4 1167 aaKnown RBP6.29□□□□□ -1.4
VPS54-204ENST00000416400 OVCH1Q7RTY7 1134 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 SMC1BQ8NDV3 1235 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 BHLHE22Q8NFJ8 381 aaPredicted RBP6.29□□□□□ -1.4
VPS54-204ENST00000416400 MTMR8Q96EF0 704 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 BCAS3Q9H6U6 928 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 CHPF2Q9P2E5 772 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 B4GALT6Q9UBX8 382 aa6.29□□□□□ -1.4
VPS54-204ENST00000416400 RFXAPO00287 272 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 BUB1BO60566 1050 aaPredicted RBP6.28□□□□□ -1.4
VPS54-204ENST00000416400 TADA3O75528 432 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 ALDH1L1O75891 902 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 FKBP9O95302 570 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 ASGR2P07307 311 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 PDE6AP16499 860 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 LSSP48449 732 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 MECP2P51608 486 aaKnown RBP6.28□□□□□ -1.4
VPS54-204ENST00000416400 CDR1P51861 262 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 NCKAP1LP55160 1127 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 ITKQ08881 620 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 MTMR1Q13613 665 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 ARHGAP36Q6ZRI8 547 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 FKBP9P1Q75LS8 142 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 C2orf69Q8N8R5 385 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 UHMK1Q8TAS1 419 aaKnown RBP6.28□□□□□ -1.4
VPS54-204ENST00000416400 SIGLEC10Q96LC7 697 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 GPR101Q96P66 508 aaPredicted RBP6.28□□□□□ -1.4
VPS54-204ENST00000416400 ASPSCR1Q9BZE9 553 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 PUS7LQ9H0K6 701 aaKnown RBP6.28□□□□□ -1.4
VPS54-204ENST00000416400 PCDH18Q9HCL0 1135 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 ASH2LQ9UBL3 628 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 CBLCQ9ULV8 474 aa6.28□□□□□ -1.4
VPS54-204ENST00000416400 TCRBV5S2A0A599 114 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 PTPDC1A2A3K4 754 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 NKRFO15226 690 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS54-204ENST00000416400 NKX3-2P78367 333 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 TTF1Q15361 905 aaPredicted RBP6.27□□□□□ -1.41
VPS54-204ENST00000416400 ARHGAP44Q17R89 818 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 HSP90AB2PQ58FF8 381 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 CD300LDQ6UXZ3 194 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms