RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TUBB2BQ9BVA1 445 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 MAGEC2Q9UBF1 373 aaPredicted RBP16.51■□□□□ 0.23
USP4-203ENST00000415188 LGALS16A8MUM7 142 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 TFRCP02786 760 aaKnown RBP16.5■□□□□ 0.23
USP4-203ENST00000415188 GYPCP04921 128 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 AKR1B1P15121 316 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 MAPK4P31152 587 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 PTPN21Q16825 1174 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 RASGRP2Q7LDG7 609 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 GPR142Q7Z601 462 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 DPF3Q92784 378 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 MTMR9Q96QG7 549 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 NUDT12Q9BQG2 462 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 LRRC27Q9C0I9 530 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.5■□□□□ 0.23
USP4-203ENST00000415188 RPAP3Q9H6T3 665 aaPredicted RBP16.5■□□□□ 0.23
USP4-203ENST00000415188 RIC8AQ9NPQ8 531 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 EXOC1Q9NV70 894 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 OGFRQ9NZT2 677 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 ADGRG1Q9Y653 693 aa16.5■□□□□ 0.23
USP4-203ENST00000415188 PP2D1A8MPX8 630 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 CCNE1P24864 410 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 CDC25AP30304 524 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 CCT6AP40227 531 aaKnown RBP16.49■□□□□ 0.23
USP4-203ENST00000415188 GNG11P61952 73 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 PDIA5Q14554 519 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 HABP4Q5JVS0 413 aaKnown RBP16.49■□□□□ 0.23
USP4-203ENST00000415188 CNNM4Q6P4Q7 775 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 MNS1Q8NEH6 495 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 TRIM9Q9C026 710 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 TAB2Q9NYJ8 693 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 RABGAP1Q9Y3P9 1069 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 CEP290O15078 2479 aa16.49■□□□□ 0.23
USP4-203ENST00000415188 SPDYE16A6NNV3 312 aaPredicted RBP16.48■□□□□ 0.23
USP4-203ENST00000415188 EFCAB8A8MWE9 144 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 URI1O94763 535 aaPredicted RBP16.48■□□□□ 0.23
USP4-203ENST00000415188 GCFC2P16383 781 aaKnown RBP16.48■□□□□ 0.23
USP4-203ENST00000415188 CASP14P31944 242 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 ELF2Q15723 593 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 CALCRLQ16602 461 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 KIAA1755Q5JYT7 1200 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 PPP4R3AQ6IN85 833 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 TTI2Q6NXR4 508 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 CYP26C1Q6V0L0 522 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 TMEM179Q6ZVK1 233 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 PLEKHH3Q7Z736 793 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 SMAP1Q8IYB5 467 aaPredicted RBP16.48■□□□□ 0.23
USP4-203ENST00000415188 SOCS4Q8WXH5 440 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 USP6NLQ92738 828 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 IQCDQ96DY2 449 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 MTMR8Q96EF0 704 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 CRISPLD2Q9H0B8 497 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 CPVLQ9H3G5 476 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 VAT1LQ9HCJ6 419 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 BTBD7Q9P203 1132 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 FRMPD2Q68DX3 1309 aaPredicted RBP16.48■□□□□ 0.23
USP4-203ENST00000415188 PVALEFA0A1B0GWK0 134 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 DNM2P50570 870 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 MRPL12P52815 198 aaKnown RBP16.48■□□□□ 0.23
USP4-203ENST00000415188 NAA30Q147X3 362 aaPredicted RBP16.48■□□□□ 0.23
USP4-203ENST00000415188 CCL14Q16627 93 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 MORN1Q5T089 497 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 JAKMIP3Q5VZ66 844 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 FOXR2Q6PJQ5 311 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 RAD9BQ6WBX8 426 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 IRF2BP1Q8IU81 584 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 SIAH1Q8IUQ4 282 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 LRRC47Q8N1G4 583 aaKnown RBP16.48■□□□□ 0.23
USP4-203ENST00000415188 P2RX5Q93086 422 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 UBA5Q9GZZ9 404 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 VPS16Q9H269 839 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 ABHD10Q9NUJ1 306 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 MYO1AQ9UBC5 1043 aa16.48■□□□□ 0.23
USP4-203ENST00000415188 DDX41Q9UJV9 622 aaKnown RBP16.48■□□□□ 0.23
USP4-203ENST00000415188 RPTORQ8N122 1335 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 SOWAHDA6NJG2 315 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 KIF5CO60282 957 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 TADA3O75528 432 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 CLK2P49760 499 aaKnown RBP16.47■□□□□ 0.23
USP4-203ENST00000415188 FXR1P51114 621 aaKnown RBP eCLIP16.47■□□□□ 0.23
USP4-203ENST00000415188 ASIC1P78348 528 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 UBXN1Q04323 297 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 WDR78Q5VTH9 848 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 MCTP2Q6DN12 878 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 SV2BQ7L1I2 683 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 MB21D1Q8N884 522 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 RETREG2Q8NC44 543 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 DIS3LQ8TF46 1054 aaKnown RBP16.47■□□□□ 0.23
USP4-203ENST00000415188 DCAF4Q8WV16 495 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 UBXN4Q92575 508 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 CUL5Q93034 780 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 KIFC2Q96AC6 838 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 MMTAG2Q9BU76 263 aaKnown RBP16.47■□□□□ 0.23
USP4-203ENST00000415188 HTATIP2Q9BUP3 242 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 NUP58Q9BVL2 599 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 JMJD4Q9H9V9 463 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 HMX1Q9NP08 348 aaPredicted RBP16.47■□□□□ 0.23
USP4-203ENST00000415188 COLQQ9Y215 455 aaPredicted RBP16.47■□□□□ 0.23
USP4-203ENST00000415188 MRFAP1Q9Y605 127 aa16.47■□□□□ 0.23
USP4-203ENST00000415188 ABCB11O95342 1321 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms