RNA–Protein interactions for RNA: ENST00000413219.6

SDCBP-202, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SDCBP, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-202ENST00000413219 ERVK-9P63128 1117 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 ACTN3Q08043 901 aaPredicted RBP19.34■□□□□ 0.69
SDCBP-202ENST00000413219 HYIQ5T013 277 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 RUFY4Q6ZNE9 571 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 NUDT12Q9BQG2 462 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.34■□□□□ 0.69
SDCBP-202ENST00000413219 NFS1Q9Y697 457 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 BZW2Q9Y6E2 419 aaKnown RBP19.34■□□□□ 0.69
SDCBP-202ENST00000413219 COL5A3P25940 1745 aaPredicted RBP19.34■□□□□ 0.69
SDCBP-202ENST00000413219 SLC26A4O43511 780 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 ANXA13P27216 316 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 ECHS1P30084 290 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 HSD17B3P37058 310 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 MTMR3Q13615 1198 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 RPAINQ86UA6 219 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 TXNRD3Q86VQ6 643 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 ADAMTS1Q9UHI8 967 aa19.34■□□□□ 0.69
SDCBP-202ENST00000413219 KDM3AQ9Y4C1 1321 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 MYO1FO00160 1098 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 ERCC3P19447 782 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 DNA2P51530 1060 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 SMTNP53814 917 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 HDLBPQ00341 1268 aaKnown RBP19.33■□□□□ 0.69
SDCBP-202ENST00000413219 HLTFQ14527 1009 aaKnown RBP eCLIP19.33■□□□□ 0.69
SDCBP-202ENST00000413219 AGBL2Q5U5Z8 902 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 PPP1R18Q6NYC8 613 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 PPP4R3CPQ6ZMV5 832 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 KLHL7Q8IXQ5 586 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 CCDC65Q8IXS2 484 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 PACSIN1Q9BY11 444 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 NT5C3AQ9H0P0 336 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 VAT1LQ9HCJ6 419 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 PACSIN2Q9UNF0 486 aaPredicted RBP19.33■□□□□ 0.69
SDCBP-202ENST00000413219 JAG2Q9Y219 1238 aa19.33■□□□□ 0.69
SDCBP-202ENST00000413219 E7EVH7 732 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 CCDC188H7C350 402 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 KCNK3O14649 394 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 SEC24CP53992 1094 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 TRADDQ15628 312 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 FAM133AQ8N9E0 248 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 ACSBG1Q96GR2 724 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 ACTR5Q9H9F9 607 aaPredicted RBP19.32■□□□□ 0.68
SDCBP-202ENST00000413219 SLC12A6Q9UHW9 1150 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 PCDHA2Q9Y5H9 948 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 A0A0G2JS52 829 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 DDB1Q16531 1140 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 EDRF1Q3B7T1 1238 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 MAPKAPK5Q8IW41 473 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 LRRC57Q8N9N7 239 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 CYFIP2Q96F07 1278 aa19.32■□□□□ 0.68
SDCBP-202ENST00000413219 TACO1Q9BSH4 297 aaKnown RBP19.32■□□□□ 0.68
SDCBP-202ENST00000413219 SAP30BPQ9UHR5 308 aaKnown RBP19.32■□□□□ 0.68
SDCBP-202ENST00000413219 PGRMC1O00264 195 aaKnown RBP19.31■□□□□ 0.68
SDCBP-202ENST00000413219 ZPR1O75312 459 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 UAP1Q16222 522 aaPredicted RBP19.31■□□□□ 0.68
SDCBP-202ENST00000413219 KCTD10Q9H3F6 313 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 ZNF831Q5JPB2 1677 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 GMNCA6NCL1 334 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 PAEPP09466 180 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 EPS15P42566 896 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 DIXDC1Q155Q3 683 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 ECM1Q16610 540 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 ASPRV1Q53RT3 343 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 RNF187Q5TA31 235 aaPredicted RBP19.31■□□□□ 0.68
SDCBP-202ENST00000413219 ARMC9Q7Z3E5 817 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 CEP95Q96GE4 821 aa19.31■□□□□ 0.68
SDCBP-202ENST00000413219 RTFDC1Q9BY42 306 aaPredicted RBP19.31■□□□□ 0.68
SDCBP-202ENST00000413219 DDX60LQ5H9U9 1706 aaKnown RBP19.3■□□□□ 0.68
SDCBP-202ENST00000413219 USP17L5A8MUK1 530 aa19.3■□□□□ 0.68
SDCBP-202ENST00000413219 TRAPPC3O43617 180 aa19.3■□□□□ 0.68
SDCBP-202ENST00000413219 ZBTB48P10074 688 aaPredicted RBP19.3■□□□□ 0.68
SDCBP-202ENST00000413219 GCFC2P16383 781 aaKnown RBP19.3■□□□□ 0.68
SDCBP-202ENST00000413219 RNASE9P60153 205 aaKnown RBP19.3■□□□□ 0.68
SDCBP-202ENST00000413219 ZNF844Q08AG5 666 aa19.3■□□□□ 0.68
SDCBP-202ENST00000413219 IFT88Q13099 833 aa19.3■□□□□ 0.68
SDCBP-202ENST00000413219 TBC1D9BQ66K14 1250 aa19.3■□□□□ 0.68
SDCBP-202ENST00000413219 IRF2BP2Q7Z5L9 587 aa19.3■□□□□ 0.68
SDCBP-202ENST00000413219 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.3■□□□□ 0.68
SDCBP-202ENST00000413219 SLITRK6Q9H5Y7 841 aa19.3■□□□□ 0.68
SDCBP-202ENST00000413219 TNRC6CQ9HCJ0 1690 aaKnown RBP19.3■□□□□ 0.68
SDCBP-202ENST00000413219 CEP104O60308 925 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 RASSF9O75901 435 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 HPDP32754 393 aaPredicted RBP19.29■□□□□ 0.68
SDCBP-202ENST00000413219 CTNNA1P35221 906 aaKnown RBP19.29■□□□□ 0.68
SDCBP-202ENST00000413219 PRKCIP41743 596 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 ARID5AQ03989 594 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 BICDL1Q6ZP65 573 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 CCDC13Q8IYE1 715 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 RASGEF1CQ8N431 466 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 LMBR1Q8WVP7 490 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 NAP1L4Q99733 375 aaKnown RBP19.29■□□□□ 0.68
SDCBP-202ENST00000413219 UBA5Q9GZZ9 404 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 POLD4Q9HCU8 107 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 THRAP3Q9Y2W1 955 aaKnown RBP19.29■□□□□ 0.68
SDCBP-202ENST00000413219 A0A0A6YYK5 440 aaPredicted RBP19.29■□□□□ 0.68
SDCBP-202ENST00000413219 C5orf60A6NFR6 353 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 CHUKO15111 745 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 CETN3O15182 167 aa19.29■□□□□ 0.68
SDCBP-202ENST00000413219 SART1O43290 800 aaKnown RBP19.29■□□□□ 0.68
SDCBP-202ENST00000413219 PDHBP11177 359 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms