RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PDE6BP35913 854 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 VAV2P52735 878 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 COG2Q14746 738 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 SFMBT2Q5VUG0 894 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 SCFD1Q8WVM8 642 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 DNAJC19Q96DA6 116 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 NUP58Q9BVL2 599 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 PODXL2Q9NZ53 605 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 KCNMA1Q12791 1236 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 KCNH2Q12809 1159 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 PRAMEF18Q5VWM3 479 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 GUF1Q8N442 669 aaKnown RBP14.76□□□□□ -0.05
VPS54-203ENST00000409558 BANK1Q8NDB2 785 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 FAM163AQ96GL9 167 aaPredicted RBP14.76□□□□□ -0.05
VPS54-203ENST00000409558 RUSC1Q9BVN2 902 aa14.76□□□□□ -0.05
VPS54-203ENST00000409558 CETN3O15182 167 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 FXR2P51116 673 aaKnown RBP eCLIP14.75□□□□□ -0.05
VPS54-203ENST00000409558 KCTD16Q68DU8 428 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 AHDC1Q5TGY3 1603 aaPredicted RBP14.75□□□□□ -0.05
VPS54-203ENST00000409558 HOXA10P31260 410 aaPredicted RBP14.75□□□□□ -0.05
VPS54-203ENST00000409558 PRKG1Q13976 671 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 SYDE2Q5VT97 1194 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 ARAP2Q8WZ64 1704 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 MEIS2O14770 477 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 LRRN2O75325 713 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 FGFR1OPO95684 399 aaKnown RBP14.75□□□□□ -0.05
VPS54-203ENST00000409558 LARGE2Q8N3Y3 721 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 TRIM31Q9BZY9 425 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 TMOD2Q9NZR1 351 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 SWAP70Q9UH65 585 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 PALMO75781 387 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 TRIM49P0CI25 452 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 TRIM49CP0CI26 452 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 EN1Q05925 392 aaPredicted RBP14.75□□□□□ -0.05
VPS54-203ENST00000409558 KIAA1755Q5JYT7 1200 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 LRRC55Q6ZSA7 311 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 TRAPPC11Q7Z392 1133 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 SIAH1Q8IUQ4 282 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 GOLGA6L1Q8N7Z2 621 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 FAM84AQ96KN4 292 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 ALS2CR12Q96Q35 445 aa14.75□□□□□ -0.05
VPS54-203ENST00000409558 A0A087X0T9 212 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 SHTN1A0MZ66 631 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 FAM228BP0C875 321 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 BRD3Q15059 726 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 SLC9C1Q4G0N8 1177 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 SIK3Q9Y2K2 1263 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 BTAF1O14981 1849 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 TISP43B9A030 160 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 RBAK-RBAKDNI3L0D1 243 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 FAM13AO94988 1023 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 KLRC1P26715 233 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 SYCP3Q8IZU3 236 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 DYDC2Q96IM9 177 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 PURBQ96QR8 312 aaKnown RBP14.74□□□□□ -0.05
VPS54-203ENST00000409558 TTYH3Q9C0H2 523 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 DHX36Q9H2U1 1008 aaKnown RBP14.74□□□□□ -0.05
VPS54-203ENST00000409558 HDAC9Q9UKV0 1011 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 EIF3JO75822 258 aaKnown RBP14.74□□□□□ -0.05
VPS54-203ENST00000409558 AMPD2Q01433 879 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 ARSHQ5FYA8 562 aa14.74□□□□□ -0.05
VPS54-203ENST00000409558 TRADDQ15628 312 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 FAM204AQ9H8W3 233 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 ARMCX3Q9UH62 379 aaPredicted RBP14.73□□□□□ -0.05
VPS54-203ENST00000409558 PRR12Q9ULL5 1215 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 ABCB11O95342 1321 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 TMEM110-MUSTN1A8MSY1 372 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 EIF3CLB5ME19 914 aaKnown RBP14.73□□□□□ -0.05
VPS54-203ENST00000409558 MSH4O15457 936 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 MYL1P05976 194 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 PAFAH1B1P43034 410 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 HLTFQ14527 1009 aaKnown RBP eCLIP14.73□□□□□ -0.054e-7■■■□□ 16.4
VPS54-203ENST00000409558 CCDC43Q96MW1 224 aaKnown RBP14.73□□□□□ -0.05
VPS54-203ENST00000409558 EIF3CQ99613 913 aaKnown RBP14.73□□□□□ -0.05
VPS54-203ENST00000409558 AP1M1Q9BXS5 423 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 PLAGL2Q9UPG8 496 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 PVALEFA0A1B0GWK0 134 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 GFPT2O94808 682 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 FOXR1Q6PIV2 292 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 MYCLP12524 364 aaPredicted RBP14.73□□□□□ -0.05
VPS54-203ENST00000409558 LRCH2Q5VUJ6 765 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 CCDC70Q6NSX1 233 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 PODNQ7Z5L7 613 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 L1RE1Q9UN81 338 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 RABGAP1Q9Y3P9 1069 aa14.73□□□□□ -0.05
VPS54-203ENST00000409558 SCN7AQ01118 1682 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 PDIA5Q14554 519 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 OGFOD1Q8N543 542 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 ERGIC2Q96RQ1 377 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 OSBPL9Q96SU4 736 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 NT5C3AQ9H0P0 336 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 ESYT2A0FGR8 921 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 KCNK3O14649 394 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 TLR2O60603 784 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 KIF20AO95235 890 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 ASIC2Q16515 512 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 DACT2Q5SW24 774 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 CERS3Q8IU89 383 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 ERMNQ8TAM6 284 aa14.72□□□□□ -0.05
VPS54-203ENST00000409558 KRT12Q99456 494 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms