RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 TRPM4Q8TD43 1214 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 CCSER1Q9C0I3 900 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 RIOX1Q9H6W3 641 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 FAM217BQ9NTX9 383 aaPredicted RBP9.99□□□□□ -0.81
LIG4-202ENST00000405925 PPP1R9AQ9ULJ8 1098 aa9.99□□□□□ -0.81
LIG4-202ENST00000405925 TXNP10599 105 aaKnown RBP9.98□□□□□ -0.81
LIG4-202ENST00000405925 EEF1GP26641 437 aaKnown RBP9.98□□□□□ -0.81
LIG4-202ENST00000405925 STAT1P42224 750 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 PSMD2Q13200 908 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 EXOC3L4Q17RC7 722 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 GIMAP8Q8ND71 665 aaPredicted RBP9.98□□□□□ -0.81
LIG4-202ENST00000405925 RWDD2AQ9UIY3 292 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 PAXBP1Q9Y5B6 917 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 GGPS1O95749 300 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 PSMC2P35998 433 aaKnown RBP9.98□□□□□ -0.81
LIG4-202ENST00000405925 EPHA7Q15375 998 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 PKN1Q16512 942 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 SLC17A8Q8NDX2 589 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 GMCL1P1Q8NEA9 526 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 MCPH1Q8NEM0 835 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 LMBR1Q8WVP7 490 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 NLRP7Q8WX94 980 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 NAA15Q9BXJ9 866 aaKnown RBP9.98□□□□□ -0.81
LIG4-202ENST00000405925 TMEM206Q9H813 350 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 JPH1Q9HDC5 661 aaPredicted RBP9.98□□□□□ -0.81
LIG4-202ENST00000405925 SLC9A2Q9UBY0 812 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 ASB14A6NK59 587 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 PSMC5P62195 406 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 TAF3Q5VWG9 929 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 ANKRD13CQ8N6S4 541 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 ZNF668Q96K58 619 aaPredicted RBP9.98□□□□□ -0.81
LIG4-202ENST00000405925 CAPZA3Q96KX2 299 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 SPATA33Q96N06 139 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 TAAR1Q96RJ0 339 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 KIAA1683Q9H0B3 1180 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 ZNF302Q9NR11 478 aa9.98□□□□□ -0.81
LIG4-202ENST00000405925 SHTN1A0MZ66 631 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 TRIM49BA6NDI0 452 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 GOLGA6L10A6NI86 522 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 OSTNP61366 133 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 PDIA5Q14554 519 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 TKFCQ3LXA3 575 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 CYFIP1Q7L576 1253 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 GPRC5AQ8NFJ5 357 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 C1orf112Q9NSG2 853 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 AFDNP55196 1824 aaKnown RBP9.97□□□□□ -0.81
LIG4-202ENST00000405925 GSTTP1A0A1W2PQM5 241 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 FSD2A1L4K1 749 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 CYP2B6P20813 491 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 PRCPP42785 496 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 COASYQ13057 564 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 MAN2A1Q16706 1144 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 TMCO3Q6UWJ1 677 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 RSPH3Q86UC2 560 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 METTL16Q86W50 562 aaKnown RBP9.97□□□□□ -0.81
LIG4-202ENST00000405925 OPTNQ96CV9 577 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 FAM167AQ96KS9 214 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 DESI2Q9BSY9 194 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 NRBP1Q9UHY1 535 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 COL16A1Q07092 1604 aaPredicted RBP9.97□□□□□ -0.81
LIG4-202ENST00000405925 PVALEFA0A1B0GWK0 134 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 GOLGA8IPA6NC78 632 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 GOLGA8JA6NMD2 632 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 NFIBO00712 420 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 CYTH3O43739 400 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 N4BP1O75113 896 aaKnown RBP9.97□□□□□ -0.81
LIG4-202ENST00000405925 SLC25A27O95847 323 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 TNNC2P02585 160 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 YARSP54577 528 aaKnown RBP9.97□□□□□ -0.81
LIG4-202ENST00000405925 JAKMIP2Q96AA8 810 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 PPP1R9BQ96SB3 815 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 ATP6V0A4Q9HBG4 840 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 CTAGE15A4D2H0 777 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 KIF4AO95239 1232 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 MYL3P08590 195 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 CTAGE8P0CG41 777 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 LRRC63Q05C16 580 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 ZBTB33Q86T24 672 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 CTAGE6Q86UF2 777 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 SESTD1Q86VW0 696 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 CTAGE4Q8IX94 777 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 EXOC8Q8IYI6 725 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 CHST13Q8NET6 341 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 CDCA5Q96FF9 252 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 NUCKS1Q9H1E3 243 aaKnown RBP9.97□□□□□ -0.81
LIG4-202ENST00000405925 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.97□□□□□ -0.81
LIG4-202ENST00000405925 V9GYY5 206 aaPredicted RBP9.97□□□□□ -0.81
LIG4-202ENST00000405925 SCN11AQ9UI33 1791 aa9.97□□□□□ -0.81
LIG4-202ENST00000405925 GOLGA6L10A0A0M3HER8 536 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 SLC16A4O15374 487 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 SLC37A4O43826 429 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 CASP14P31944 242 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 CLCN1P35523 988 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 SLC8A3P57103 927 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 GOLGA8FQ08AF8 430 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 GOLGA8DPQ0D2H9 430 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 NFX1Q12986 1120 aaKnown RBP9.96□□□□□ -0.81
LIG4-202ENST00000405925 SMC1AQ14683 1233 aaKnown RBP9.96□□□□□ -0.81
LIG4-202ENST00000405925 DAGLBQ8NCG7 672 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 ANKS1AQ92625 1134 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms