RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CNGA1P29973 690 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 TRAPPC11Q7Z392 1133 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 MTRQ99707 1265 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 DNAJC17Q9NVM6 304 aaKnown RBP13.03□□□□□ -0.32
HMGB1-206ENST00000405805 SP4Q02446 784 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 TPH2Q8IWU9 490 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 CEP95Q96GE4 821 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 KCND1Q9NSA2 647 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 GGA1Q9UJY5 639 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 MYMKA6NI61 221 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 STAT3P40763 770 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 CACNB3P54284 484 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 IL17AQ16552 155 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 FAM83BQ5T0W9 1011 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 CLEC4GQ6UXB4 293 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 SPICE1Q8N0Z3 855 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 MYCT1Q8N699 235 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 WHAMMQ8TF30 809 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 PLAAQ9Y263 795 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 BCL9O00512 1426 aa13.03□□□□□ -0.32
HMGB1-206ENST00000405805 MAP2K7O14733 419 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 GFPT2O94808 682 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 CDK8P49336 464 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 SEPT7Q16181 437 aaKnown RBP13.02□□□□□ -0.32
HMGB1-206ENST00000405805 NT5DC1Q5TFE4 455 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 RETREG2Q8NC44 543 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 HNRNPLLQ8WVV9 542 aaKnown RBP13.02□□□□□ -0.32
HMGB1-206ENST00000405805 CTTNBP2NLQ9P2B4 639 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 COL4A3BPQ9Y5P4 624 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 HLA-DOAP06340 250 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 XRCC5P13010 732 aaKnown RBP13.02□□□□□ -0.32
HMGB1-206ENST00000405805 DOK7Q18PE1 504 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 ANKRD42Q8N9B4 389 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 PTPN22Q9Y2R2 807 aa13.02□□□□□ -0.32
HMGB1-206ENST00000405805 TNFAIP3P21580 790 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 SESN3P58005 492 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 PHLDB2Q86SQ0 1253 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 GLIS3Q8NEA6 775 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 ERMNQ8TAM6 284 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 UTP11Q9Y3A2 253 aaKnown RBP13.02□□□□□ -0.33
HMGB1-206ENST00000405805 REXO2Q9Y3B8 237 aaKnown RBP13.02□□□□□ -0.33
HMGB1-206ENST00000405805 RGPD5Q99666 1765 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 POTEB3A0JP26 581 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 POTECB2RU33 542 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 PLTPP55058 493 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 CORO7P57737 925 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 DHX9Q08211 1270 aaKnown RBP13.02□□□□□ -0.33
HMGB1-206ENST00000405805 ZNF211Q13398 564 aaPredicted RBP13.02□□□□□ -0.33
HMGB1-206ENST00000405805 EXOC3L4Q17RC7 722 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 POTEBQ6S5H4 581 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 RIOK1Q9BRS2 568 aaKnown RBP13.02□□□□□ -0.33
HMGB1-206ENST00000405805 PPP1R1BQ9UD71 204 aaPredicted RBP13.02□□□□□ -0.33
HMGB1-206ENST00000405805 CD2APQ9Y5K6 639 aa13.02□□□□□ -0.33
HMGB1-206ENST00000405805 PSMD14O00487 310 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 CFBP00751 764 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 EPB41P11171 864 aaKnown RBP13.01□□□□□ -0.33
HMGB1-206ENST00000405805 ATP11AP98196 1134 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 HS2ST1Q7LGA3 356 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 CCDC26Q8TAB7 109 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 CUL5Q93034 780 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 ZIM3Q96PE6 472 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 DNM3Q9UQ16 869 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 EPHB6O15197 1021 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 NFIXQ14938 502 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.01□□□□□ -0.33
HMGB1-206ENST00000405805 LRRC45Q96CN5 670 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 GBP5Q96PP8 586 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 MLXIPLQ9NP71 852 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 ARHGAP20Q9P2F6 1191 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 CHORDC1Q9UHD1 332 aaPredicted RBP13.01□□□□□ -0.33
HMGB1-206ENST00000405805 FLOT1O75955 427 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 H2AFZP0C0S5 128 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 TMOD1P28289 359 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 COPB2P35606 906 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 TTBK2Q6IQ55 1244 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 TTI2Q6NXR4 508 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 H2AFVQ71UI9 128 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 GIMAP8Q8ND71 665 aaPredicted RBP13.01□□□□□ -0.33
HMGB1-206ENST00000405805 EMILIN3Q9NT22 766 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 NARFQ9UHQ1 456 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 GGT7Q9UJ14 662 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 RAB21Q9UL25 225 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 THRAP3Q9Y2W1 955 aaKnown RBP13.01□□□□□ -0.33
HMGB1-206ENST00000405805 PCDHA1Q9Y5I3 950 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 ITIH6Q6UXX5 1313 aa13.01□□□□□ -0.33
HMGB1-206ENST00000405805 TULP2O00295 520 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 SPOPO43791 374 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 RPS6KA4O75676 772 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 KLRC1P26715 233 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 ALKBH5Q6P6C2 394 aaKnown RBP13□□□□□ -0.33
HMGB1-206ENST00000405805 WDR59Q6PJI9 974 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 CAPN12Q6ZSI9 719 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 DGKHQ86XP1 1220 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 ZNF512BQ96KM6 892 aaPredicted RBP13□□□□□ -0.33
HMGB1-206ENST00000405805 PACSIN1Q9BY11 444 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 BARHL2Q9NY43 387 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 SAMD15Q9P1V8 674 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 AMACRQ9UHK6 382 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 A0A1W2PQC6 194 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 LMBR1Q8WVP7 490 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms