RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MEIS2O14770 477 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 DYNC1LI2O43237 492 aaPredicted RBP10.53□□□□□ -0.72
VPS53-203ENST00000401468 ACRP10323 421 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 GJB2P29033 226 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 AKAP17AQ02040 695 aaKnown RBP10.53□□□□□ -0.72
VPS53-203ENST00000401468 FAAP100Q0VG06 881 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 BECN1Q14457 450 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 SNX17Q15036 470 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 FAM109BQ6ICB4 259 aaPredicted RBP10.53□□□□□ -0.72
VPS53-203ENST00000401468 CCSAPQ6IQ19 270 aaPredicted RBP10.53□□□□□ -0.72
VPS53-203ENST00000401468 GALNT17Q6IS24 598 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 TLK2Q86UE8 772 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 KLHDC9Q8NEP7 349 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 CCDC12Q8WUD4 166 aaPredicted RBP10.53□□□□□ -0.72
VPS53-203ENST00000401468 GPKOWQ92917 476 aaPredicted RBP eCLIP10.53□□□□□ -0.72
VPS53-203ENST00000401468 ALG1Q9BT22 464 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 GLT8D2Q9H1C3 349 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 ABHD16BQ9H3Z7 469 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 RIC8AQ9NPQ8 531 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 TMEM39AQ9NV64 488 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 RAPGEFL1Q9UHV5 662 aa10.53□□□□□ -0.72
VPS53-203ENST00000401468 CHD7Q9P2D1 2997 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 LOC102724159A0A0B4J2E5 919 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 NRG2O14511 850 aaPredicted RBP10.52□□□□□ -0.73
VPS53-203ENST00000401468 PPFIA3O75145 1194 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 DUSP11O75319 330 aaKnown RBP10.52□□□□□ -0.73
VPS53-203ENST00000401468 RAG1P15918 1043 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 CAPN2P17655 700 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 DDIT3P35638 169 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 ALDH5A1P51649 535 aaPredicted RBP10.52□□□□□ -0.73
VPS53-203ENST00000401468 NAPAP54920 295 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 PWP2Q15269 919 aaKnown RBP10.52□□□□□ -0.73
VPS53-203ENST00000401468 TAPT1Q6NXT6 567 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 HEATR3Q7Z4Q2 680 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 MCF2L2Q86YR7 1114 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 RDH13Q8NBN7 331 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 CCDC148Q8NFR7 591 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 FBXO18Q8NFZ0 1043 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 VPS54Q9P1Q0 977 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 TCHHQ07283 1943 aa10.52□□□□□ -0.73
VPS53-203ENST00000401468 SIP14410 1827 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 GRXCR1A8MXD5 290 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 S1PR4O95977 384 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 MMP1P03956 469 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 PDIA4P13667 645 aaKnown RBP10.51□□□□□ -0.73
VPS53-203ENST00000401468 XBP1P17861 261 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 GNA11P29992 359 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 CYP2C18P33260 490 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 GJA9P57773 515 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 LRIT3Q3SXY7 679 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 RNF207Q6ZRF8 634 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 MORC4Q8TE76 937 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 NLRP7Q8WX94 980 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 CRYGNQ8WXF5 182 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 TNFRSF25Q93038 417 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 GUCD1Q96NT3 240 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 TRPV6Q9H1D0 765 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 UPF3AQ9H1J1 476 aaKnown RBP10.51□□□□□ -0.73
VPS53-203ENST00000401468 PSTPIP2Q9H939 334 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 MTMR10Q9NXD2 777 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 COL20A1Q9P218 1284 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 DAXXQ9UER7 740 aaPredicted RBP10.51□□□□□ -0.73
VPS53-203ENST00000401468 NRBP1Q9UHY1 535 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 SMC3Q9UQE7 1217 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 KIF3AQ9Y496 699 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 GRIN2DO15399 1336 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 NLRC5Q86WI3 1866 aa10.51□□□□□ -0.73
VPS53-203ENST00000401468 MICAL3Q7RTP6 2002 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 EVPLQ92817 2033 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 SMCO2A6NFE2 343 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 ASB14A6NK59 587 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 ADAMTS3O15072 1205 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 DTNBO60941 627 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 ADH1BP00325 375 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 MYL3P08590 195 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 PDCP20941 246 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 EDNRBP24530 442 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 ANP32AP39687 249 aaKnown RBP10.5□□□□□ -0.73
VPS53-203ENST00000401468 ADCY7P51828 1080 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 MRPL12P52815 198 aaKnown RBP10.5□□□□□ -0.73
VPS53-203ENST00000401468 CCL23P55773 120 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 RPS6P62753 249 aaKnown RBP10.5□□□□□ -0.73
VPS53-203ENST00000401468 FSCN1Q16658 493 aaKnown RBP10.5□□□□□ -0.73
VPS53-203ENST00000401468 PUS10Q3MIT2 529 aaKnown RBP10.5□□□□□ -0.73
VPS53-203ENST00000401468 KRT40Q6A162 431 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 MCTP2Q6DN12 878 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 BICD2Q8TD16 824 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 CUL5Q93034 780 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 RNPC3Q96LT9 517 aaKnown RBP10.5□□□□□ -0.73
VPS53-203ENST00000401468 GLT1D1Q96MS3 346 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 AP5M1Q9H0R1 490 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 C6orf50Q9HD87 102 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 GJB4Q9NTQ9 266 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 PCDHA4Q9UN74 947 aa10.5□□□□□ -0.73
VPS53-203ENST00000401468 GNEQ9Y223 722 aaKnown RBP10.5□□□□□ -0.73
VPS53-203ENST00000401468 COL4A4P53420 1690 aaPredicted RBP10.5□□□□□ -0.73
VPS53-203ENST00000401468 ATG2AQ2TAZ0 1938 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 DDX11L8A8MPP1 907 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 DCDC2CA8MYV0 355 aa10.49□□□□□ -0.73
VPS53-203ENST00000401468 GCOM1H8Y6P7 765 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 335.6 ms