RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 NAP1L4Q99733 375 aaKnown RBP24.62■■□□□ 1.53
CLN3-207ENST00000395653 GDF15Q99988 308 aa24.62■■□□□ 1.53
CLN3-207ENST00000395653 TRMT13Q9NUP7 481 aaKnown RBP24.62■■□□□ 1.53
CLN3-207ENST00000395653 EMSYQ7Z589 1322 aa24.62■■□□□ 1.53
CLN3-207ENST00000395653 MSH4O15457 936 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 RAG1P15918 1043 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 GCFC2P16383 781 aaKnown RBP24.61■■□□□ 1.53
CLN3-207ENST00000395653 MAGEA10P43363 369 aaPredicted RBP24.61■■□□□ 1.53
CLN3-207ENST00000395653 ACTR2P61160 394 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 GUCY1B3Q02153 619 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 PPP4R3AQ6IN85 833 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 TRIM50Q86XT4 487 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 PPP1R13LQ8WUF5 828 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 LBHD1Q9BQE6 289 aaPredicted RBP24.61■■□□□ 1.53
CLN3-207ENST00000395653 HDAC6Q9UBN7 1215 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 GTF2IRD1Q9UHL9 959 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 DDX39AO00148 427 aaKnown RBP24.61■■□□□ 1.53
CLN3-207ENST00000395653 ATG7O95352 703 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 CHRDL2Q6WN34 429 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 SLC5A5Q92911 643 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 RIT2Q99578 217 aa24.61■■□□□ 1.53
CLN3-207ENST00000395653 DDX25Q9UHL0 483 aaKnown RBP24.61■■□□□ 1.53
CLN3-207ENST00000395653 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.61■■□□□ 1.53
CLN3-207ENST00000395653 LGR5O75473 907 aa24.6■■□□□ 1.53
CLN3-207ENST00000395653 CCNE2O96020 404 aa24.6■■□□□ 1.53
CLN3-207ENST00000395653 TIMP1P01033 207 aa24.6■■□□□ 1.53
CLN3-207ENST00000395653 ITGB8P26012 769 aa24.6■■□□□ 1.53
CLN3-207ENST00000395653 ZNF746Q6NUN9 644 aaPredicted RBP24.6■■□□□ 1.53
CLN3-207ENST00000395653 PRO3102Q9H379 93 aa24.6■■□□□ 1.53
CLN3-207ENST00000395653 SMARCAD1Q9H4L7 1026 aa24.6■■□□□ 1.53
CLN3-207ENST00000395653 TCEAL9Q9UHQ7 104 aa24.6■■□□□ 1.53
CLN3-207ENST00000395653 FAM205CA6NFA0 338 aa24.59■■□□□ 1.53
CLN3-207ENST00000395653 BMP8BP34820 402 aa24.59■■□□□ 1.53
CLN3-207ENST00000395653 MDM2Q00987 491 aaPredicted RBP24.59■■□□□ 1.53
CLN3-207ENST00000395653 KRT76Q01546 638 aa24.59■■□□□ 1.53
CLN3-207ENST00000395653 CUL4AQ13619 759 aa24.59■■□□□ 1.53
CLN3-207ENST00000395653 PTGISQ16647 500 aa24.59■■□□□ 1.53
CLN3-207ENST00000395653 GDF6Q6KF10 455 aaPredicted RBP24.59■■□□□ 1.53
CLN3-207ENST00000395653 FOXP1Q9H334 677 aaPredicted RBP24.59■■□□□ 1.53
CLN3-207ENST00000395653 ERAP1Q9NZ08 941 aa24.59■■□□□ 1.53
CLN3-207ENST00000395653 PCDH10Q9P2E7 1040 aa24.59■■□□□ 1.53
CLN3-207ENST00000395653 NOD1Q9Y239 953 aa24.59■■□□□ 1.53
CLN3-207ENST00000395653 CCNT1O60563 726 aaKnown RBP24.58■■□□□ 1.53
CLN3-207ENST00000395653 GJB2P29033 226 aa24.58■■□□□ 1.53
CLN3-207ENST00000395653 ABHD15Q6UXT9 468 aa24.58■■□□□ 1.53
CLN3-207ENST00000395653 SMAP1Q8IYB5 467 aaPredicted RBP24.58■■□□□ 1.53
CLN3-207ENST00000395653 GLG1Q92896 1179 aa24.58■■□□□ 1.53
CLN3-207ENST00000395653 BADQ92934 168 aa24.58■■□□□ 1.53
CLN3-207ENST00000395653 UIMC1Q96RL1 719 aa24.58■■□□□ 1.53
CLN3-207ENST00000395653 PCYT2Q99447 389 aa24.58■■□□□ 1.53
CLN3-207ENST00000395653 HIPK3Q9H422 1215 aa24.58■■□□□ 1.53
CLN3-207ENST00000395653 AZI2Q9H6S1 392 aa24.58■■□□□ 1.53
CLN3-207ENST00000395653 SMC3Q9UQE7 1217 aa24.58■■□□□ 1.53
CLN3-207ENST00000395653 IGKV6D-21A0A0A0MT36 114 aa24.57■■□□□ 1.52
CLN3-207ENST00000395653 SLC37A4O43826 429 aa24.57■■□□□ 1.52
CLN3-207ENST00000395653 GAS7O60861 476 aa24.57■■□□□ 1.52
CLN3-207ENST00000395653 HOXC8P31273 242 aa24.57■■□□□ 1.52
CLN3-207ENST00000395653 LRCH2Q5VUJ6 765 aa24.57■■□□□ 1.52
CLN3-207ENST00000395653 ETNPPLQ8TBG4 499 aa24.57■■□□□ 1.52
CLN3-207ENST00000395653 NOC4LQ9BVI4 516 aaKnown RBP24.57■■□□□ 1.52
CLN3-207ENST00000395653 COLQQ9Y215 455 aaPredicted RBP24.57■■□□□ 1.52
CLN3-207ENST00000395653 PSMD10O75832 226 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 SMIM10L2AP0DMW4 78 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 SMIM10L2BP0DMW5 78 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 CYP2C9P11712 490 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 MFSD5Q6N075 450 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 MIS18BP1Q6P0N0 1132 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 PLPPR4Q7Z2D5 763 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 CTAGE1Q96RT6 745 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 TEKT3Q9BXF9 490 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 PPP1R12CQ9BZL4 782 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 KCNMB3Q9NPA1 279 aa24.56■■□□□ 1.52
CLN3-207ENST00000395653 RANBP2P49792 3224 aaKnown RBP24.56■■□□□ 1.52
CLN3-207ENST00000395653 C17orf102A2RUQ5 167 aa24.55■■□□□ 1.52
CLN3-207ENST00000395653 SLC26A2P50443 739 aa24.55■■□□□ 1.52
CLN3-207ENST00000395653 STAT5BP51692 787 aa24.55■■□□□ 1.52
CLN3-207ENST00000395653 AFAP1L1Q8TED9 768 aa24.55■■□□□ 1.52
CLN3-207ENST00000395653 SNX21Q969T3 373 aa24.55■■□□□ 1.52
CLN3-207ENST00000395653 RNPEPQ9H4A4 650 aa24.55■■□□□ 1.52
CLN3-207ENST00000395653 WDR64B1ANS9 1081 aa24.54■■□□□ 1.52
CLN3-207ENST00000395653 K7ELQ4 463 aaPredicted RBP24.54■■□□□ 1.52
CLN3-207ENST00000395653 TBX3O15119 743 aa24.54■■□□□ 1.52
CLN3-207ENST00000395653 FAM160B1Q5W0V3 765 aa24.54■■□□□ 1.52
CLN3-207ENST00000395653 FAM20AQ96MK3 541 aa24.54■■□□□ 1.52
CLN3-207ENST00000395653 UBE2OQ9C0C9 1292 aaKnown RBP24.54■■□□□ 1.52
CLN3-207ENST00000395653 PCDHA10Q9Y5I2 948 aa24.54■■□□□ 1.52
CLN3-207ENST00000395653 NRCAMQ92823 1304 aa24.54■■□□□ 1.52
CLN3-207ENST00000395653 A0A1W2PPC1 479 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 PITPNM1O00562 1244 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 GNAT1P11488 350 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 SFNP31947 248 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 CYP2C18P33260 490 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 GNL2Q13823 731 aaKnown RBP24.53■■□□□ 1.52
CLN3-207ENST00000395653 HIC1Q14526 733 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 NOSTRINQ8IVI9 506 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 CCDC60Q8IWA6 550 aaPredicted RBP24.53■■□□□ 1.52
CLN3-207ENST00000395653 CAGE1Q8TC20 777 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 GJA10Q969M2 543 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 ZNF302Q9NR11 478 aa24.53■■□□□ 1.52
CLN3-207ENST00000395653 BACH1O14867 736 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms