RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLK3-202ENST00000395066 FAM170AA1A519 330 aa22.71■■□□□ 1.23
CLK3-202ENST00000395066 MEIS1O00470 390 aa22.71■■□□□ 1.23
CLK3-202ENST00000395066 SHMT1P34896 483 aa22.71■■□□□ 1.23
CLK3-202ENST00000395066 TRADDQ15628 312 aa22.71■■□□□ 1.23
CLK3-202ENST00000395066 CERS3Q8IU89 383 aa22.71■■□□□ 1.23
CLK3-202ENST00000395066 ARL8AQ96BM9 186 aa22.71■■□□□ 1.23
CLK3-202ENST00000395066 PCDHA2Q9Y5H9 948 aa22.71■■□□□ 1.23
CLK3-202ENST00000395066 CRY2Q49AN0 593 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 GBP6Q6ZN66 633 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 MICALL1Q8N3F8 863 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 EBAG9O00559 213 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 MED24O75448 989 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 FAM153BP0C7A2 387 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 CARSP49589 748 aaKnown RBP22.7■■□□□ 1.22
CLK3-202ENST00000395066 CACNB3P54284 484 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 FAM153CQ494X1 144 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 ZFPM1Q8IX07 1006 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 SLF2Q8IX21 1173 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 SH3GL2Q99962 352 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 USP40Q9NVE5 1235 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 FAM153AQ9UHL3 310 aa22.7■■□□□ 1.22
CLK3-202ENST00000395066 SSU72P8A0A1W2PR75 194 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 NFIAQ12857 509 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 PROM2Q8N271 834 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 IFT81Q8WYA0 676 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 RBM17Q96I25 401 aaKnown RBP22.69■■□□□ 1.22
CLK3-202ENST00000395066 PLIN4Q96Q06 1357 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 ZBTB5O15062 677 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 OPA1O60313 960 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 SERPING1P05155 500 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 KRT18P05783 430 aaKnown RBP22.69■■□□□ 1.22
CLK3-202ENST00000395066 PSMC6P62333 389 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 PDE4CQ08493 712 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 DOK7Q18PE1 504 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 TRIM59Q8IWR1 403 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 BCAS4Q8TDM0 211 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 NFU1Q9UMS0 254 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 ATP6V0A2Q9Y487 856 aa22.69■■□□□ 1.22
CLK3-202ENST00000395066 TAF1LQ8IZX4 1826 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 ARFGEF1Q9Y6D6 1849 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 EIF3HO15372 352 aaKnown RBP eCLIP22.68■■□□□ 1.22
CLK3-202ENST00000395066 GYS1P13807 737 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 CYP11B2P19099 503 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 MRPL12P52815 198 aaKnown RBP22.68■■□□□ 1.22
CLK3-202ENST00000395066 GNGT1P63211 74 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 ADAM9Q13443 819 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 KIAA0753Q2KHM9 967 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 ARSHQ5FYA8 562 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 SH2D3CQ8N5H7 860 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 PROCA1Q8NCQ7 364 aaPredicted RBP22.68■■□□□ 1.22
CLK3-202ENST00000395066 P2RX7Q99572 595 aaKnown RBP22.68■■□□□ 1.22
CLK3-202ENST00000395066 KCTD10Q9H3F6 313 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 BMP2KQ9NSY1 1161 aaPredicted RBP22.68■■□□□ 1.22
CLK3-202ENST00000395066 EMILIN3Q9NT22 766 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 PCDHAC2Q9Y5I4 1007 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 GRIN2DO15399 1336 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 ADAMTSL1Q8N6G6 1762 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 EPHB4P54760 987 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 KCTD16Q68DU8 428 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 TBC1D22AQ8WUA7 517 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 LRRC27Q9C0I9 530 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 FAM169AQ9Y6X4 670 aa22.68■■□□□ 1.22
CLK3-202ENST00000395066 KRT14P02533 472 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 GUCY2FP51841 1108 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 GUCY2DQ02846 1103 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 TTMPQ5BVD1 217 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 EPB41L5Q9HCM4 733 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 SHTN1A0MZ66 631 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 RBAK-RBAKDNI3L0D1 243 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 SLC9A1P19634 815 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 PPARDQ03181 441 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 KLHL30Q0D2K2 578 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 QRICH1Q2TAL8 776 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 CCDC65Q8IXS2 484 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 KRT12Q99456 494 aa22.67■■□□□ 1.22
CLK3-202ENST00000395066 HEXIM1O94992 359 aaKnown RBP22.66■■□□□ 1.22
CLK3-202ENST00000395066 EPS15P42566 896 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 KCNH2Q12809 1159 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 CFAP221Q4G0U5 840 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 EMBQ6PCB8 327 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 CERKQ8TCT0 537 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 TCP10Q12799 353 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 PABPC4Q13310 644 aaKnown RBP eCLIP22.66■■□□□ 1.22
CLK3-202ENST00000395066 NAB2Q15742 525 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 ZIM3Q96PE6 472 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 RUFY1Q96T51 708 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 ATF5Q9Y2D1 282 aaPredicted RBP22.66■■□□□ 1.22
CLK3-202ENST00000395066 PCDHA1Q9Y5I3 950 aa22.66■■□□□ 1.22
CLK3-202ENST00000395066 ERLIN2O94905 339 aa22.65■■□□□ 1.22
CLK3-202ENST00000395066 EPB41P11171 864 aaKnown RBP22.65■■□□□ 1.22
CLK3-202ENST00000395066 NR2F2P24468 414 aa22.65■■□□□ 1.22
CLK3-202ENST00000395066 SLC18A3Q16572 532 aa22.65■■□□□ 1.22
CLK3-202ENST00000395066 ALS2CLQ60I27 953 aa22.65■■□□□ 1.22
CLK3-202ENST00000395066 SLC30A10Q6XR72 485 aa22.65■■□□□ 1.22
CLK3-202ENST00000395066 LIG3P49916 1009 aa22.65■■□□□ 1.22
CLK3-202ENST00000395066 PRR16Q569H4 304 aa22.65■■□□□ 1.22
CLK3-202ENST00000395066 NT5C3AQ9H0P0 336 aa22.65■■□□□ 1.22
CLK3-202ENST00000395066 GANQ9H2C0 597 aa22.65■■□□□ 1.22
CLK3-202ENST00000395066 IKZF4Q9H2S9 585 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms