RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MTMR1Q13613 665 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 LAMC2Q13753 1193 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 MTFR1Q15390 333 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 PRAMEF19Q5SWL8 479 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 NEK8Q86SG6 692 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 FBXO16Q8IX29 292 aaPredicted RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 ZNF830Q96NB3 372 aaPredicted RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 TSEN34Q9BSV6 310 aaKnown RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 TRIM5Q9C035 493 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 TMEM260Q9NX78 707 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 DDX41Q9UJV9 622 aaKnown RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 FBXO2Q9UK22 296 aaPredicted RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 KCNH3Q9ULD8 1083 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 PCDHB6Q9Y5E3 794 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 ZSWIM8A7E2V4 1837 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 RGS20O76081 388 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 ITGB5P18084 799 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 CST5P28325 142 aaPredicted RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 GJA9P57773 515 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 Q4G0T1 1027 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 SARM1Q6SZW1 724 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 SEPT14Q6ZU15 432 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 RNF180Q86T96 592 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 SPC24Q8NBT2 197 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 IL31RAQ8NI17 732 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 U2AF1L4Q8WU68 220 aaKnown RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 DEFB118Q96PH6 123 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 BPIFA3Q9BQP9 254 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 AP5M1Q9H0R1 490 aa11.47□□□□□ -0.57
VPS53-202ENST00000389040 UPF3AQ9H1J1 476 aaKnown RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 TTC12Q9H892 705 aaPredicted RBP11.47□□□□□ -0.57
VPS53-202ENST00000389040 TBX3O15119 743 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 ZEB2O60315 1214 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 OFD1O75665 1012 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 GH1P01241 217 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 SMPD1P17405 629 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 ADCYAP1R1P41586 468 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 CPT1AP50416 773 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 NLRP12P59046 1061 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 DPCR1Q3MIW9 517 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 EEPD1Q7L9B9 569 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 ZNF579Q8NAF0 562 aaKnown RBP11.46□□□□□ -0.58
VPS53-202ENST00000389040 PCSK9Q8NBP7 692 aaKnown RBP11.46□□□□□ -0.58
VPS53-202ENST00000389040 MBOAT7Q96N66 472 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 SEZ6LQ9BYH1 1024 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 XPNPEP3Q9NQH7 507 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 KCNH7Q9NS40 1196 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 TBC1D22BQ9NU19 505 aa11.46□□□□□ -0.58
VPS53-202ENST00000389040 MORC2Q9Y6X9 1032 aaPredicted RBP11.46□□□□□ -0.58
VPS53-202ENST00000389040 FAM205CA6NFA0 338 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 DNM1LO00429 736 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 TFRCP02786 760 aaKnown RBP11.45□□□□□ -0.58
VPS53-202ENST00000389040 CDC25BP30305 580 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 METTL7BQ6UX53 244 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.45□□□□□ -0.58
VPS53-202ENST00000389040 PIK3AP1Q6ZUJ8 805 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 AOPEPQ8N6M6 819 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 RASGRP4Q8TDF6 673 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 PDGFCQ9NRA1 345 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 FAM13BQ9NYF5 915 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 SRPRBQ9Y5M8 271 aaKnown RBP11.45□□□□□ -0.58
VPS53-202ENST00000389040 RBBP6Q7Z6E9 1792 aaKnown RBP11.45□□□□□ -0.58
VPS53-202ENST00000389040 ZNFX1Q9P2E3 1918 aaKnown RBP11.45□□□□□ -0.58
VPS53-202ENST00000389040 SMCHD1A6NHR9 2005 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 NFASCO94856 1347 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 IGLV3-22A0A075B6J6 115 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 FAM86B1E9PN63 330 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 CABYRO75952 493 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 FAM86B2P0C5J1 330 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 ATP2B1P20020 1258 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 LONRF3Q496Y0 759 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 EARS2Q5JPH6 523 aaKnown RBP11.45□□□□□ -0.58
VPS53-202ENST00000389040 CELF3Q5SZQ8 465 aaKnown RBP11.45□□□□□ -0.58
VPS53-202ENST00000389040 KRBA2Q6ZNG9 492 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 DRC7Q8IY82 874 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 ELOA2Q8IYF1 753 aaPredicted RBP11.45□□□□□ -0.58
VPS53-202ENST00000389040 CNNM3Q8NE01 707 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 KLHDC9Q8NEP7 349 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 FAM20AQ96MK3 541 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 RIT2Q99578 217 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 TUBE1Q9UJT0 475 aa11.45□□□□□ -0.58
VPS53-202ENST00000389040 MOXD2PA6NHM9 499 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 A6NJR5 290 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 BIN1O00499 593 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 ADAMTS4O75173 837 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 PPFIA4O75335 1185 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 BMP15O95972 392 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 GRIN1Q05586 938 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 INF2Q27J81 1249 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 SPECC1Q5M775 1068 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 TLK2Q86UE8 772 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 DHX37Q8IY37 1157 aaKnown RBP11.44□□□□□ -0.58
VPS53-202ENST00000389040 PPTC7Q8NI37 304 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 MRFAP1L1Q96HT8 127 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 NAP1L5Q96NT1 182 aaPredicted RBP11.44□□□□□ -0.58
VPS53-202ENST00000389040 KCNF1Q9H3M0 494 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 HOOK1Q9UJC3 728 aaKnown RBP11.44□□□□□ -0.58
VPS53-202ENST00000389040 PLXNA1Q9UIW2 1896 aa11.44□□□□□ -0.58
VPS53-202ENST00000389040 IPO5O00410 1097 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms