RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 CALCRLQ16602 461 aa6.55□□□□□ -1.36
VPS13B-203ENST00000358544 KDM4CQ9H3R0 1056 aa6.55□□□□□ -1.36
VPS13B-203ENST00000358544 TBK1Q9UHD2 729 aa6.55□□□□□ -1.36
VPS13B-203ENST00000358544 INHBAP08476 426 aa6.55□□□□□ -1.36
VPS13B-203ENST00000358544 KRT3P12035 628 aa6.55□□□□□ -1.36
VPS13B-203ENST00000358544 ART3Q13508 389 aa6.55□□□□□ -1.36
VPS13B-203ENST00000358544 FAM47EQ6ZV65 393 aa6.55□□□□□ -1.36
VPS13B-203ENST00000358544 WDR75Q8IWA0 830 aaKnown RBP6.55□□□□□ -1.36
VPS13B-203ENST00000358544 VPS54Q9P1Q0 977 aa6.55□□□□□ -1.36
VPS13B-203ENST00000358544 CORO1CQ9ULV4 474 aaPredicted RBP6.55□□□□□ -1.36
VPS13B-203ENST00000358544 CC2D2AQ9P2K1 1620 aa6.55□□□□□ -1.36
VPS13B-203ENST00000358544 RPS6KA5O75582 802 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 ITIH4Q14624 930 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 MTF1Q14872 753 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 CCDC87Q9NVE4 849 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 FAM187AA6NFU0 413 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 GHRP10912 638 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 CCNHP51946 323 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 CUL4BQ13620 913 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 BSPRYQ5W0U4 402 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 SRRM1Q8IYB3 904 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 CCDC138Q96M89 665 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 DCTN4Q9UJW0 460 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 SASH3O75995 380 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 SERPING1P05155 500 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 ADD1P35611 737 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 COPS2P61201 443 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 BABAM1Q9NWV8 329 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 WARS2Q9UGM6 360 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 CFAP69A5D8W1 941 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 SCG2P13521 617 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 KRT81Q14533 505 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 USP40Q9NVE5 1235 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 EXOC7Q9UPT5 735 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 TRMT1LQ7Z2T5 733 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 TRAPPC11Q7Z392 1133 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 RASSF3Q86WH2 238 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 RIN2Q8WYP3 895 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 ARMT1Q9H993 441 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 MYH7BA7E2Y1 1941 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 DOCK10Q96BY6 2186 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 TOB2Q14106 344 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 TRABDQ9H4I3 376 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 VIRMAQ69YN4 1812 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 ATF7P17544 494 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 EPHB1P54762 984 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 TMPRSS15P98073 1019 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 TEDDM1Q5T9Z0 273 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 HIPK4Q8NE63 616 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 PPWD1Q96BP3 646 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 SEPT3Q9UH03 358 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 ZNF148Q9UQR1 794 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 BTBD18B2RXH4 712 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 CPP00450 1065 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 MAP4P27816 1152 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 TRIM16LQ309B1 348 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 REXO1Q8N1G1 1221 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 NESP48681 1621 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 DDAH1O94760 285 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 KRT75O95678 551 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 CCNE1P24864 410 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 BYSLQ13895 437 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 OLFML3Q9NRN5 406 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 BIN2Q9UBW5 565 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 DIS3Q9Y2L1 958 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 COL4A3BPQ9Y5P4 624 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 POLR1AO95602 1720 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 TXKP42681 527 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 SFSWAPQ12872 951 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 MYLK4Q86YV6 388 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 ZNF654Q8IZM8 581 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 RNF169Q8NCN4 708 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 FLT4P35916 1363 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 PPARAQ07869 468 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 RBM43Q6ZSC3 357 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 CCDC124Q96CT7 223 aaKnown RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 GORASP1Q9BQQ3 440 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 TRIM15Q9C019 465 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 BSDC1Q9NW68 430 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 SCHIP1Q9P0W5 487 aaPredicted RBP6.54□□□□□ -1.36
VPS13B-203ENST00000358544 PNMA2Q9UL42 364 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 ZNF518AQ6AHZ1 1483 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 PTPRTO14522 1441 aa6.54□□□□□ -1.36
VPS13B-203ENST00000358544 SH3TC1Q8TE82 1336 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 ASPHQ12797 758 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 KCNB1Q14721 858 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 PDXDC1Q6P996 788 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 RPGRQ92834 1020 aaKnown RBP6.53□□□□□ -1.36
VPS13B-203ENST00000358544 ARHGAP31Q2M1Z3 1444 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 SUPT3HO75486 399 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 FANCBQ8NB91 859 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 SPATA4Q8NEY3 305 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 CFAP36Q96G28 342 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 SNX12Q9UMY4 172 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 SH2B2O14492 632 aaPredicted RBP6.53□□□□□ -1.36
VPS13B-203ENST00000358544 CENPUQ71F23 418 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 ARL8AQ96BM9 186 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.53□□□□□ -1.362e-6■■□□□ 13.6
VPS13B-203ENST00000358544 CHMP2AO43633 222 aa6.53□□□□□ -1.36
VPS13B-203ENST00000358544 DEAF1O75398 565 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms