RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 BZW2Q9Y6E2 419 aaKnown RBP16.24■□□□□ 0.19
COL17A1-201ENST00000353479 ENTPD3O75355 529 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 TDP2O95551 362 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 ADAT2Q7Z6V5 191 aaKnown RBP16.24■□□□□ 0.19
COL17A1-201ENST00000353479 SLC16A10Q8TF71 515 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 RSAD2Q8WXG1 361 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 MSTO1Q9BUK6 570 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 GIMAP8Q8ND71 665 aaPredicted RBP16.24■□□□□ 0.19
COL17A1-201ENST00000353479 UBE2TQ9NPD8 197 aaPredicted RBP16.24■□□□□ 0.19
COL17A1-201ENST00000353479 POTEB3A0JP26 581 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 POTECB2RU33 542 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 KRIT1O00522 736 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 LMNB1P20700 586 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 MXI1P50539 228 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 PAK2Q13177 524 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 C6orf163Q5TEZ5 329 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 POTEBQ6S5H4 581 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 SNX25Q9H3E2 840 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 EPB41L4AQ9HCS5 686 aaPredicted RBP16.23■□□□□ 0.19
COL17A1-201ENST00000353479 GGA3Q9NZ52 723 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 ATP5DP30049 168 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 ATP6V0A4Q9HBG4 840 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 RSPH14Q9UHP6 348 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 KRT76Q01546 638 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 PADI6Q6TGC4 694 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 ZNF579Q8NAF0 562 aaKnown RBP16.23■□□□□ 0.19
COL17A1-201ENST00000353479 MAP2P11137 1827 aaKnown RBP16.23■□□□□ 0.19
COL17A1-201ENST00000353479 IVLP07476 585 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 FCER1AP12319 257 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 ITIH3Q06033 890 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 ALCAMQ13740 583 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 ANKS4BQ8N8V4 417 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 FAM133AQ8N9E0 248 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 CALCOCO1Q9P1Z2 691 aa16.23■□□□□ 0.19
COL17A1-201ENST00000353479 KDM6AO15550 1401 aaPredicted RBP16.23■□□□□ 0.19
COL17A1-201ENST00000353479 KIF28PB7ZC32 967 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 RNF8O76064 485 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 UNC13DQ70J99 1090 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 RAD54LQ92698 747 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 PXDNQ92626 1479 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 HACL1Q9UJ83 578 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 GFPT2O94808 682 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 LRRC63Q05C16 580 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 FASTKD5Q7L8L6 764 aaKnown RBP16.22■□□□□ 0.19
COL17A1-201ENST00000353479 SFR1Q86XK3 245 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 TCP11Q8WWU5 503 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 GOLPH3LQ9H4A5 285 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 FEZ2Q9UHY8 353 aaPredicted RBP16.22■□□□□ 0.19
COL17A1-201ENST00000353479 CDC25BP30305 580 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 NFX1Q12986 1120 aaKnown RBP16.22■□□□□ 0.19
COL17A1-201ENST00000353479 MESDQ14696 234 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 RPF1Q9H9Y2 349 aaKnown RBP16.22■□□□□ 0.19
COL17A1-201ENST00000353479 MYOZ2Q9NPC6 264 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 PP2D1A8MPX8 630 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 IGDCC4Q8TDY8 1250 aa16.22■□□□□ 0.19
COL17A1-201ENST00000353479 ARHGEF28Q8N1W1 1705 aaKnown RBP16.21■□□□□ 0.19
COL17A1-201ENST00000353479 KIF20BQ96Q89 1820 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 NDUFB10O96000 172 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 CD58P19256 250 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 SWSAP1Q6NVH7 229 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 C16orf86Q6ZW13 317 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 CATSPER4Q7RTX7 472 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 NBPF11Q86T75 865 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 METTL23Q86XA0 190 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.21■□□□□ 0.19
COL17A1-201ENST00000353479 FBF1Q8TES7 1133 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 FAM167AQ96KS9 214 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 ZNF302Q9NR11 478 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 PRKAG2Q9UGJ0 569 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 IPO5O00410 1097 aaKnown RBP16.21■□□□□ 0.19
COL17A1-201ENST00000353479 CSPG5O95196 566 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 ZNF543Q08ER8 600 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 NEDD9Q14511 834 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 TTLL4Q14679 1199 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 CFAP157Q5JU67 520 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 POTEFA5A3E0 1075 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 POTEIP0CG38 1075 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 FDX1P10109 184 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 VPS41P49754 854 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 WHAMMP3Q1A5X7 153 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 POTEGQ6S5H5 508 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 POTEEQ6S8J3 1075 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 SAMD7Q7Z3H4 446 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 THNSL1Q8IYQ7 743 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 C7orf31Q8N865 590 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 FAM151AQ8WW52 585 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 TMEM39BQ9GZU3 492 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 RAB17Q9H0T7 212 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 GABBR1Q9UBS5 961 aa16.21■□□□□ 0.19
COL17A1-201ENST00000353479 EHHADHQ08426 723 aa16.21■□□□□ 0.18
COL17A1-201ENST00000353479 KAZNQ674X7 775 aa16.21■□□□□ 0.18
COL17A1-201ENST00000353479 NDST4Q9H3R1 872 aa16.21■□□□□ 0.18
COL17A1-201ENST00000353479 SERPINA10Q9UK55 444 aa16.21■□□□□ 0.18
COL17A1-201ENST00000353479 TBC1D8O95759 1140 aa16.2■□□□□ 0.18
COL17A1-201ENST00000353479 SPZ1Q9BXG8 430 aa16.2■□□□□ 0.18
COL17A1-201ENST00000353479 TRIM7Q9C029 511 aa16.2■□□□□ 0.18
COL17A1-201ENST00000353479 HAUS2Q9NVX0 235 aa16.2■□□□□ 0.18
COL17A1-201ENST00000353479 MYO1FO00160 1098 aa16.2■□□□□ 0.18
COL17A1-201ENST00000353479 RASA1P20936 1047 aa16.2■□□□□ 0.18
COL17A1-201ENST00000353479 SCARA5Q6ZMJ2 495 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms