RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 RRP1BQ14684 758 aaKnown RBP24.06■■□□□ 1.44
SHMT1-202ENST00000352886 TRIM59Q8IWR1 403 aa24.06■■□□□ 1.44
SHMT1-202ENST00000352886 SPICE1Q8N0Z3 855 aa24.06■■□□□ 1.44
SHMT1-202ENST00000352886 CAGE1Q8TC20 777 aa24.06■■□□□ 1.44
SHMT1-202ENST00000352886 RPGRIP1Q96KN7 1286 aa24.06■■□□□ 1.44
SHMT1-202ENST00000352886 PRMT6Q96LA8 375 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-202ENST00000352886 CSRNP1Q96S65 589 aa24.06■■□□□ 1.44
SHMT1-202ENST00000352886 CEP72Q9P209 647 aa24.06■■□□□ 1.44
SHMT1-202ENST00000352886 ENTPD3O75355 529 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 SPATA31C1P0DKV0 1188 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 RPA1P27694 616 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 MARSP56192 900 aaKnown RBP24.05■■□□□ 1.44
SHMT1-202ENST00000352886 DNM3Q9UQ16 869 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 JRKLQ9Y4A0 524 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 A0A1W2PRG0 241 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 OPLAHO14841 1288 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 NOL4O94818 638 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 MOCS3O95396 460 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 MMP14P50281 582 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 GFPT1Q06210 699 aaPredicted RBP24.05■■□□□ 1.44
SHMT1-202ENST00000352886 ADAM9Q13443 819 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 CRACR2AQ9BSW2 395 aa24.05■■□□□ 1.44
SHMT1-202ENST00000352886 LSM14BQ9BX40 385 aaKnown RBP24.05■■□□□ 1.44
SHMT1-202ENST00000352886 H3BQF6 201 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 CASP5P51878 434 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 GIT2Q14161 759 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 ASTE1Q2TB18 679 aaPredicted RBP24.04■■□□□ 1.44
SHMT1-202ENST00000352886 TDRD12Q587J7 1177 aaKnown RBP24.04■■□□□ 1.44
SHMT1-202ENST00000352886 HGSNATQ68CP4 663 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 DRC1Q96MC2 740 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 ATAD5Q96QE3 1844 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 PDE2AO00408 941 aaPredicted RBP24.04■■□□□ 1.44
SHMT1-202ENST00000352886 MAGEA1P43355 309 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 FAM83BQ5T0W9 1011 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 ARHGAP27Q6ZUM4 889 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 FAM20AQ96MK3 541 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 PDE11AQ9HCR9 933 aa24.04■■□□□ 1.44
SHMT1-202ENST00000352886 SSU72P8A0A1W2PR75 194 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 MSH4O15457 936 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 POLR2FP61218 127 aaKnown RBP24.03■■□□□ 1.44
SHMT1-202ENST00000352886 MAPK8IP2Q13387 824 aaPredicted RBP24.03■■□□□ 1.44
SHMT1-202ENST00000352886 BTNL9Q6UXG8 535 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 PPP4R3CPQ6ZMV5 832 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 SYT2Q8N9I0 419 aaPredicted RBP24.03■■□□□ 1.44
SHMT1-202ENST00000352886 CYP2W1Q8TAV3 490 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 REEP2Q9BRK0 252 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 SNX12Q9UMY4 172 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 EDRF1Q3B7T1 1238 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 CC2D2BQ6DHV5 1058 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 ZC3H3Q8IXZ2 948 aaKnown RBP24.03■■□□□ 1.44
SHMT1-202ENST00000352886 PRR12Q9ULL5 1215 aa24.03■■□□□ 1.44
SHMT1-202ENST00000352886 NR2F2P24468 414 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 CIITAP33076 1130 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 APBA1Q02410 837 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 CYP4A11Q02928 519 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 CASP8Q14790 479 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 SFMBT2Q5VUG0 894 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 CNKSR1Q969H4 720 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 NUCKS1Q9H1E3 243 aaKnown RBP24.02■■□□□ 1.44
SHMT1-202ENST00000352886 FAM184BQ9ULE4 1060 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 CETN3O15182 167 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 CYP2C19P33261 490 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 GPS2Q13227 327 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 SLC9C1Q4G0N8 1177 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 SFR1Q86XK3 245 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 ALS2CR12Q96Q35 445 aa24.02■■□□□ 1.44
SHMT1-202ENST00000352886 TLR2O60603 784 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 EIF3JO75822 258 aaKnown RBP24.01■■□□□ 1.43
SHMT1-202ENST00000352886 ZNF76P36508 570 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 EPS15P42566 896 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 ECE1P42892 770 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 ANKRD13CQ8N6S4 541 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 SYN2Q92777 582 aaPredicted RBP24.01■■□□□ 1.43
SHMT1-202ENST00000352886 ZBTB9Q96C00 473 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 SALL4Q9UJQ4 1053 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 VAV3Q9UKW4 847 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 ERICH4A6NGS2 130 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 YDJCA8MPS7 323 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 PJA2O43164 708 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 RASSF7Q02833 373 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 MSL3Q8N5Y2 521 aaKnown RBP24.01■■□□□ 1.43
SHMT1-202ENST00000352886 C7orf43Q8WVR3 580 aa24.01■■□□□ 1.43
SHMT1-202ENST00000352886 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.01■■□□□ 1.43
SHMT1-202ENST00000352886 SERPING1P05155 500 aa24■■□□□ 1.43
SHMT1-202ENST00000352886 CREG2Q8IUH2 290 aa24■■□□□ 1.43
SHMT1-202ENST00000352886 ZKSCAN7Q9P0L1 754 aaPredicted RBP24■■□□□ 1.43
SHMT1-202ENST00000352886 TARSL2A2RTX5 802 aaKnown RBP24■■□□□ 1.43
SHMT1-202ENST00000352886 MCM3P25205 808 aa24■■□□□ 1.43
SHMT1-202ENST00000352886 STAT2P52630 851 aa24■■□□□ 1.43
SHMT1-202ENST00000352886 C2orf54Q08AI8 447 aa24■■□□□ 1.43
SHMT1-202ENST00000352886 KCNH2Q12809 1159 aa24■■□□□ 1.43
SHMT1-202ENST00000352886 KNOP1Q1ED39 458 aaKnown RBP24■■□□□ 1.43
SHMT1-202ENST00000352886 BHMT2Q9H2M3 363 aa24■■□□□ 1.43
SHMT1-202ENST00000352886 STK24Q9Y6E0 443 aa24■■□□□ 1.43
SHMT1-202ENST00000352886 COL2A1P02458 1487 aaPredicted RBP23.99■■□□□ 1.43
SHMT1-202ENST00000352886 TCP10L2B9ZVM9 353 aa23.99■■□□□ 1.43
SHMT1-202ENST00000352886 RBAK-RBAKDNI3L0D1 243 aa23.99■■□□□ 1.43
SHMT1-202ENST00000352886 PPIP5K2O43314 1243 aa23.99■■□□□ 1.43
SHMT1-202ENST00000352886 IQCEQ6IPM2 695 aa23.99■■□□□ 1.43
SHMT1-202ENST00000352886 COG1Q8WTW3 980 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms