RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 LINC00301Q8NCQ3 95 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 FBXO22Q8NEZ5 403 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 BICD2Q8TD16 824 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 RAD9AQ99638 391 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 NOL10Q9BSC4 688 aaKnown RBP9.39□□□□□ -0.91
CD44-205ENST00000352818 MYL10Q9BUA6 226 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 DACT1Q9NYF0 836 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 SMG1Q96Q15 3661 aaKnown RBP9.39□□□□□ -0.91
CD44-205ENST00000352818 MYH1P12882 1939 aa9.39□□□□□ -0.91
CD44-205ENST00000352818 BAIAP3O94812 1187 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 CAVIN2O95810 425 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 GTF2F1P35269 517 aaKnown RBP eCLIP9.38□□□□□ -0.91
CD44-205ENST00000352818 FOSBP53539 338 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 HYAL1Q12794 435 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 TMEM63BQ5T3F8 832 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 IFIT1BQ5T764 474 aaKnown RBP9.38□□□□□ -0.91
CD44-205ENST00000352818 ADALQ6DHV7 355 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 CATIPQ7Z7H3 387 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 RAB11FIP4Q86YS3 637 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 RIOX2Q8IUF8 465 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 AMOTL1Q8IY63 956 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 MSL3Q8N5Y2 521 aaKnown RBP9.38□□□□□ -0.91
CD44-205ENST00000352818 MAP3K14Q99558 947 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 SLC26A6Q9BXS9 759 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 TNMDQ9H2S6 317 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 TCP11L1Q9NUJ3 509 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.38□□□□□ -0.91
CD44-205ENST00000352818 ADAMTS5Q9UNA0 930 aa9.38□□□□□ -0.91
CD44-205ENST00000352818 GCN1Q92616 2671 aaKnown RBP9.38□□□□□ -0.91
CD44-205ENST00000352818 CYP2D7A0A087X1C5 515 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 SPTLC2O15270 562 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 LINC01565O15544 149 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 PPP6R2O75170 966 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 CABYRO75952 493 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 SLC25A27O95847 323 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 MMP1P03956 469 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 RXRAP19793 462 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 RFC2P35250 354 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 USP5P45974 858 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 GUCY1B3Q02153 619 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 FAM160A1Q05DH4 1040 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 FUT2Q10981 343 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 TROAPQ12815 778 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 MCTP2Q6DN12 878 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 CCDC73Q6ZRK6 1079 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 FAM177A1Q8N128 213 aaPredicted RBP9.37□□□□□ -0.91
CD44-205ENST00000352818 REPS2Q8NFH8 660 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 ENGASEQ8NFI3 743 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 PPP1R13LQ8WUF5 828 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 TGFBRAP1Q8WUH2 860 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 MRPS27Q92552 414 aaKnown RBP9.37□□□□□ -0.91
CD44-205ENST00000352818 PHKBQ93100 1093 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 MSLNLQ96KJ4 702 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 RIPOR3Q96MK2 946 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 ZKSCAN3Q9BRR0 538 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 FTOQ9C0B1 505 aaKnown RBP eCLIP9.37□□□□□ -0.91
CD44-205ENST00000352818 TANGO6Q9C0B7 1094 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 FOXP1Q9H334 677 aaPredicted RBP9.37□□□□□ -0.91
CD44-205ENST00000352818 NSUN3Q9H649 340 aaKnown RBP9.37□□□□□ -0.91
CD44-205ENST00000352818 SPC25Q9HBM1 224 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 ZNF287Q9HBT7 754 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 SAP30BPQ9UHR5 308 aaKnown RBP9.37□□□□□ -0.91
CD44-205ENST00000352818 GNEQ9Y223 722 aaKnown RBP9.37□□□□□ -0.91
CD44-205ENST00000352818 PCDHGC5Q9Y5F6 944 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 PLIN4Q96Q06 1357 aa9.37□□□□□ -0.91
CD44-205ENST00000352818 CNTNAP5Q8WYK1 1306 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 SIP14410 1827 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 FAM237AA0A1B0GTK4 181 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 PRPF3O43395 683 aaKnown RBP9.36□□□□□ -0.91
CD44-205ENST00000352818 NR1I2O75469 434 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 EYA4O95677 639 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 XBP1P17861 261 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 MKRN4PQ13434 485 aaPredicted RBP9.36□□□□□ -0.91
CD44-205ENST00000352818 SNW1Q13573 536 aaKnown RBP9.36□□□□□ -0.91
CD44-205ENST00000352818 SLC39A14Q15043 492 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 STK38Q15208 465 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 SAFBQ15424 915 aaKnown RBP eCLIP9.36□□□□□ -0.91
CD44-205ENST00000352818 FSCN1Q16658 493 aaKnown RBP9.36□□□□□ -0.91
CD44-205ENST00000352818 EPC2Q52LR7 807 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 TMTC3Q6ZXV5 915 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 DGKHQ86XP1 1220 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 CCDC144CPQ8IYA2 1237 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 AIFM3Q96NN9 605 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 ZBED2Q9BTP6 218 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.36□□□□□ -0.91
CD44-205ENST00000352818 GOLPH3LQ9H4A5 285 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 MCM9Q9NXL9 1143 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 ZNF214Q9UL59 606 aaPredicted RBP9.36□□□□□ -0.91
CD44-205ENST00000352818 PCDHA7Q9UN72 937 aa9.36□□□□□ -0.91
CD44-205ENST00000352818 ZNFX1Q9P2E3 1918 aaKnown RBP9.36□□□□□ -0.91
CD44-205ENST00000352818 GREB1LQ9C091 1923 aaPredicted RBP9.35□□□□□ -0.91
CD44-205ENST00000352818 TSPY2A6NKD2 308 aa9.35□□□□□ -0.91
CD44-205ENST00000352818 H3BNC9 293 aa9.35□□□□□ -0.91
CD44-205ENST00000352818 PPFIA3O75145 1194 aa9.35□□□□□ -0.91
CD44-205ENST00000352818 FLOT1O75955 427 aa9.35□□□□□ -0.91
CD44-205ENST00000352818 CYP2D6P10635 497 aa9.35□□□□□ -0.91
CD44-205ENST00000352818 ICAM3P32942 547 aa9.35□□□□□ -0.91
CD44-205ENST00000352818 SHMT1P34896 483 aa9.35□□□□□ -0.91
CD44-205ENST00000352818 KCNJ6P48051 423 aa9.35□□□□□ -0.91
CD44-205ENST00000352818 ME1P48163 572 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms