RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 CCDC38Q502W7 563 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 MAEAQ7L5Y9 396 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 TBC1D1Q86TI0 1168 aaPredicted RBP12.99□□□□□ -0.33
RTN3-203ENST00000341307 CD302Q8IX05 232 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 RUBCNQ92622 972 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 NAF1Q96HR8 494 aaKnown RBP12.99□□□□□ -0.33
RTN3-203ENST00000341307 CCDC43Q96MW1 224 aaKnown RBP12.99□□□□□ -0.33
RTN3-203ENST00000341307 SLC12A6Q9UHW9 1150 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 C6orf229H3BNL8 230 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 RNF225M0QZC1 329 aaPredicted RBP12.99□□□□□ -0.33
RTN3-203ENST00000341307 RIMBP2O15034 1052 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 CREB3O43889 395 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 PAX3P23760 479 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 CCND1P24385 295 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 MPP3Q13368 585 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 SFMBT2Q5VUG0 894 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 DPY19L2Q6NUT2 758 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 TMTC2Q8N394 836 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 TBC1D16Q8TBP0 767 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 WDR66Q8TBY9 1149 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 DYNLL2Q96FJ2 89 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 TFR2Q9UP52 801 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 BCS1LQ9Y276 419 aa12.99□□□□□ -0.33
RTN3-203ENST00000341307 CCDC88AQ3V6T2 1871 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 GOLGA6L10A6NI86 522 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 FOXN1O15353 648 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 SRGNP10124 158 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 IFNAR1P17181 557 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 EIF4BP23588 611 aaKnown RBP12.98□□□□□ -0.33
RTN3-203ENST00000341307 CFAP58Q5T655 872 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 IFIT1BQ5T764 474 aaKnown RBP12.98□□□□□ -0.33
RTN3-203ENST00000341307 CNGA4Q8IV77 575 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 C1orf131Q8NDD1 294 aaKnown RBP12.98□□□□□ -0.33
RTN3-203ENST00000341307 PRCCQ92733 491 aaPredicted RBP12.98□□□□□ -0.33
RTN3-203ENST00000341307 ANKRD31Q8N7Z5 1873 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 CCT8L1PA6NM43 557 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 HMGB1P1B2RPK0 211 aaPredicted RBP12.98□□□□□ -0.33
RTN3-203ENST00000341307 MARCKSP29966 332 aaPredicted RBP12.98□□□□□ -0.33
RTN3-203ENST00000341307 HPDP32754 393 aaPredicted RBP12.98□□□□□ -0.33
RTN3-203ENST00000341307 TAF11Q15544 211 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 SPTY2D1Q68D10 685 aaPredicted RBP12.98□□□□□ -0.33
RTN3-203ENST00000341307 SHC4Q6S5L8 630 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 MLKLQ8NB16 471 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 PROCA1Q8NCQ7 364 aaPredicted RBP12.98□□□□□ -0.33
RTN3-203ENST00000341307 CCDC51Q96ER9 411 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 PREBQ9HCU5 417 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 ATP8A2Q9NTI2 1148 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 SUN2Q9UH99 717 aa12.98□□□□□ -0.33
RTN3-203ENST00000341307 PLEKHA8P1O95397 391 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 VIMP08670 466 aaKnown RBP12.97□□□□□ -0.33
RTN3-203ENST00000341307 ZNF24P17028 368 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 CCDC70Q6NSX1 233 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 APLFQ8IW19 511 aaPredicted RBP12.97□□□□□ -0.33
RTN3-203ENST00000341307 CRACR2BQ8N4Y2 399 aaPredicted RBP12.97□□□□□ -0.33
RTN3-203ENST00000341307 TGFBRAP1Q8WUH2 860 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 MAIP1Q8WWC4 291 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 ABHD10Q9NUJ1 306 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 SAP30BPQ9UHR5 308 aaKnown RBP12.97□□□□□ -0.33
RTN3-203ENST00000341307 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.97□□□□□ -0.33
RTN3-203ENST00000341307 BTBD18B2RXH4 712 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 F8W031 263 aaPredicted RBP12.97□□□□□ -0.33
RTN3-203ENST00000341307 H0YIN7 160 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 ABLIM1O14639 778 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 BBOX1O75936 387 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 GSTA1P08263 222 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 FGRP09769 529 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 FAM153BP0C7A2 387 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 ATP2B4P23634 1241 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 TNFRSF8P28908 595 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 HOXA10P31260 410 aaPredicted RBP12.97□□□□□ -0.33
RTN3-203ENST00000341307 DEUP1Q05D60 604 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 TRIM29Q14134 588 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 LBRQ14739 615 aaKnown RBP12.97□□□□□ -0.33
RTN3-203ENST00000341307 SGSM1Q2NKQ1 1148 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 FAM153CQ494X1 144 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 ANO1Q5XXA6 986 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 ELOA2Q8IYF1 753 aaPredicted RBP12.97□□□□□ -0.33
RTN3-203ENST00000341307 SLC44A5Q8NCS7 719 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 MIPOL1Q8TD10 442 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 GALNT8Q9NY28 637 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 FAM153AQ9UHL3 310 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 MAN1B1Q9UKM7 699 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 MAST2Q6P0Q8 1798 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 NRXN2Q9P2S2 1712 aa12.97□□□□□ -0.33
RTN3-203ENST00000341307 PPEF1O14829 653 aaPredicted RBP12.96□□□□□ -0.33
RTN3-203ENST00000341307 TMOD1P28289 359 aa12.96□□□□□ -0.33
RTN3-203ENST00000341307 KIF5BP33176 963 aa12.96□□□□□ -0.33
RTN3-203ENST00000341307 POLE2P56282 527 aa12.96□□□□□ -0.33
RTN3-203ENST00000341307 DYNC1I2Q13409 638 aaKnown RBP12.96□□□□□ -0.33
RTN3-203ENST00000341307 MFSD14BQ5SR56 506 aa12.96□□□□□ -0.33
RTN3-203ENST00000341307 CYP26C1Q6V0L0 522 aa12.96□□□□□ -0.33
RTN3-203ENST00000341307 MAPKAPK5Q8IW41 473 aa12.96□□□□□ -0.33
RTN3-203ENST00000341307 SHISA4Q96DD7 197 aa12.96□□□□□ -0.33
RTN3-203ENST00000341307 MTRQ99707 1265 aa12.96□□□□□ -0.33
RTN3-203ENST00000341307 ARPP21Q9UBL0 812 aaPredicted RBP12.96□□□□□ -0.33
RTN3-203ENST00000341307 ADD3Q9UEY8 706 aaKnown RBP12.96□□□□□ -0.33
RTN3-203ENST00000341307 CFAP73A6NFT4 308 aa12.96□□□□□ -0.34
RTN3-203ENST00000341307 A8MUI8 341 aa12.96□□□□□ -0.34
RTN3-203ENST00000341307 RPL13P26373 211 aaKnown RBP12.96□□□□□ -0.34
RTN3-203ENST00000341307 ALDH5A1P51649 535 aaPredicted RBP12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms