RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 ITIH4Q14624 930 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 TRADDQ15628 312 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 RALYLQ86SE5 291 aaKnown RBP12.92□□□□□ -0.34
SHMT2-201ENST00000328923 IFT20Q8IY31 132 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 ABTB1Q969K4 478 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-201ENST00000328923 FAM136AQ96C01 138 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 RMDN2Q96LZ7 410 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 ATP8A2Q9NTI2 1148 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 RBM12Q9NTZ6 932 aaKnown RBP12.92□□□□□ -0.34
SHMT2-201ENST00000328923 SNX12Q9UMY4 172 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 STK36Q9NRP7 1315 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 TNS2Q63HR2 1409 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 ANO9A1A5B4 782 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 NBPF26B4DH59 902 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 NDUFB5O43674 189 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 BAG3O95817 575 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 SHBGP04278 402 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 ETS2P15036 469 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 ZFXP17010 805 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-201ENST00000328923 VARSP26640 1264 aaKnown RBP12.92□□□□□ -0.34
SHMT2-201ENST00000328923 HDAC4P56524 1084 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 DDB1Q16531 1140 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 CMPK2Q5EBM0 449 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 OGFOD1Q8N543 542 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 CLMNQ96JQ2 1002 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 GBP5Q96PP8 586 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 ELAC2Q9BQ52 826 aaKnown RBP12.92□□□□□ -0.34
SHMT2-201ENST00000328923 GPCPD1Q9NPB8 672 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 HSFX1Q9UBD0 423 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 NOVA2Q9UNW9 492 aaKnown RBP12.92□□□□□ -0.34
SHMT2-201ENST00000328923 BRWD3Q6RI45 1802 aa12.92□□□□□ -0.34
SHMT2-201ENST00000328923 CTNND1O60716 968 aaKnown RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 GSTA2P09210 222 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 PTPREP23469 700 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 MLH1P40692 756 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 CACNA2D1P54289 1103 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 KLHL10Q6JEL2 608 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 IRGCQ6NXR0 463 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 C3orf67Q6ZVT6 689 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 ZNF572Q7Z3I7 529 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 CACNA2D4Q7Z3S7 1137 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 GRAMD1CQ8IYS0 662 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 DNAJC9Q8WXX5 260 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 RNF25Q96BH1 459 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 GJD4Q96KN9 370 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 GDF3Q9NR23 364 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 ARHGEF3Q9NR81 526 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 ATP8A1Q9Y2Q0 1164 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 SH3GLB1Q9Y371 365 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 CETN3O15182 167 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 PTCD1O75127 700 aaKnown RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 CYP1A1P04798 512 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 XBP1P17861 261 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 GBP1P32455 592 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 CLCN2P51788 898 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 MAGOHP61326 146 aaKnown RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 ITIH3Q06033 890 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 ZNF844Q08AG5 666 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 TRIM29Q14134 588 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 ZC2HC1CQ53FD0 456 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 SMUG1Q53HV7 270 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 RASIP1Q5U651 963 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 NFRKBQ6P4R8 1299 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 PIGWQ7Z7B1 504 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 IQCF2Q8IXL9 164 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 ARHGAP18Q8N392 663 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 PLBD2Q8NHP8 589 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 LZICQ8WZA0 190 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 MAGOHBQ96A72 148 aaKnown RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 CLIP3Q96DZ5 547 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 ZNF317Q96PQ6 595 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-201ENST00000328923 UBAP1Q9NZ09 502 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 SYNRGQ9UMZ2 1314 aa12.91□□□□□ -0.34
SHMT2-201ENST00000328923 EIF3FO00303 357 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-201ENST00000328923 FOXP2O15409 715 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 KRT38O76015 456 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 HEXIM1O94992 359 aaKnown RBP12.9□□□□□ -0.34
SHMT2-201ENST00000328923 METAP2P50579 478 aaKnown RBP eCLIP12.9□□□□□ -0.341e-6■■■□□ 16.1
SHMT2-201ENST00000328923 PLS1Q14651 629 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 ERMARDQ5T6L9 678 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 ZNF662Q6ZS27 426 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 STK11IPQ8N1F8 1099 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 WDR66Q8TBY9 1149 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 CASKIN2Q8WXE0 1202 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 FAM129AQ9BZQ8 928 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 RNPEPL1Q9HAU8 725 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 CCDC87Q9NVE4 849 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 RMND1Q9NWS8 449 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 FBXO2Q9UK22 296 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-201ENST00000328923 ANGEL1Q9UNK9 670 aaKnown RBP12.9□□□□□ -0.34
SHMT2-201ENST00000328923 EFR3BQ9Y2G0 817 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 ABCC12Q96J65 1359 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 TMEM247A6NEH6 219 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 H0YGN5 161 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 ACTN4O43707 911 aaKnown RBP12.9□□□□□ -0.34
SHMT2-201ENST00000328923 KRT86O43790 486 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 KCNA3P22001 575 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 CALB2P22676 271 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 RNASELQ05823 741 aaKnown RBP12.9□□□□□ -0.34
SHMT2-201ENST00000328923 DHX9Q08211 1270 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms