RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 JRKLQ9Y4A0 524 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 COL4A3BPQ9Y5P4 624 aa17.76■□□□□ 0.43
USHBP1-202ENST00000324554 ZNF646O15015 1829 aaPredicted RBP17.75■□□□□ 0.43
USHBP1-202ENST00000324554 GDF11O95390 407 aa17.75■□□□□ 0.43
USHBP1-202ENST00000324554 SSBP05455 408 aaKnown RBP eCLIP17.75■□□□□ 0.43
USHBP1-202ENST00000324554 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.75■□□□□ 0.43
USHBP1-202ENST00000324554 HDAC7Q8WUI4 952 aa17.75■□□□□ 0.43
USHBP1-202ENST00000324554 SELENOOQ9BVL4 669 aa17.75■□□□□ 0.43
USHBP1-202ENST00000324554 KCNMB3Q9NPA1 279 aa17.75■□□□□ 0.43
USHBP1-202ENST00000324554 BMP2KQ9NSY1 1161 aaPredicted RBP17.75■□□□□ 0.43
USHBP1-202ENST00000324554 CWC15Q9P013 229 aaKnown RBP17.75■□□□□ 0.43
USHBP1-202ENST00000324554 TRAF5O00463 557 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 KCNMA1Q12791 1236 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 TANGO6Q9C0B7 1094 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 FEZ2Q9UHY8 353 aaPredicted RBP17.74■□□□□ 0.43
USHBP1-202ENST00000324554 SALL4Q9UJQ4 1053 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 PCDHA2Q9Y5H9 948 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 PCDHA1Q9Y5I3 950 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 POTEB3A0JP26 581 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 POTECB2RU33 542 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 AKR1B10O60218 316 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 RPS6KA5O75582 802 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 PLA2G4BP0C869 781 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 HDLBPQ00341 1268 aaKnown RBP17.74■□□□□ 0.43
USHBP1-202ENST00000324554 PDXDC1Q6P996 788 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 POTEBQ6S5H4 581 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 NIM1KQ8IY84 436 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 ZFP91Q96JP5 570 aaPredicted RBP17.74■□□□□ 0.43
USHBP1-202ENST00000324554 MRIQ9BWK5 157 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 IDI2Q9BXS1 227 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 ANO3Q9BYT9 981 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 GLT8D2Q9H1C3 349 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 TBC1D7Q9P0N9 293 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 SIPA1L1O43166 1804 aa17.74■□□□□ 0.43
USHBP1-202ENST00000324554 AGPSO00116 658 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 TACC1O75410 805 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 EEF2P13639 858 aaKnown RBP17.73■□□□□ 0.43
USHBP1-202ENST00000324554 GGCXP38435 758 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 USP11P51784 963 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 TGFB2P61812 414 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 CDC37Q16543 378 aaPredicted RBP17.73■□□□□ 0.43
USHBP1-202ENST00000324554 ASTE1Q2TB18 679 aaPredicted RBP17.73■□□□□ 0.43
USHBP1-202ENST00000324554 CACNA2D4Q7Z3S7 1137 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 CCDC125Q86Z20 511 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 CDAN1Q8IWY9 1227 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 PSMB7Q99436 277 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 EDEM3Q9BZQ6 932 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 SMARCAL1Q9NZC9 954 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 PI4KBQ9UBF8 816 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 VIL1P09327 827 aaKnown RBP17.73■□□□□ 0.43
USHBP1-202ENST00000324554 CXCR5P32302 372 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 SLC1A4P43007 532 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 MRPS25P82663 173 aaKnown RBP17.73■□□□□ 0.43
USHBP1-202ENST00000324554 CXCL9Q07325 125 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 CCDC40Q4G0X9 1142 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 NFRKBQ6P4R8 1299 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 MKL1Q969V6 931 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 LRRC1Q9BTT6 524 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 TRIM34Q9BYJ4 488 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 VEZTQ9HBM0 779 aa17.73■□□□□ 0.43
USHBP1-202ENST00000324554 DMGDHQ9UI17 866 aaKnown RBP17.73■□□□□ 0.43
USHBP1-202ENST00000324554 CYP3A7-CYP3A51PA0A087WV96 503 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 NPHP3-ACAD11A0A0J9YXS1 232 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 CYP3A7P24462 503 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 JAG1P78504 1218 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 CACNB1Q02641 598 aaPredicted RBP17.72■□□□□ 0.43
USHBP1-202ENST00000324554 CERKLQ49MI3 558 aaPredicted RBP17.72■□□□□ 0.43
USHBP1-202ENST00000324554 HGSNATQ68CP4 663 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 LRRC31Q6UY01 552 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 CCDC65Q8IXS2 484 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 MMGT1Q8N4V1 131 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 OGFOD1Q8N543 542 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 ANKRD13CQ8N6S4 541 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 DCAF4Q8WV16 495 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 CEP63Q96MT8 703 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 MBOAT7Q96N66 472 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 EHD2Q9NZN4 543 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 ZNRF3Q9ULT6 936 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 MYO1CO00159 1063 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 MEIS2O14770 477 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 TRIM66O15016 1216 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 CYP11B2P19099 503 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 GFPT1Q06210 699 aaPredicted RBP17.72■□□□□ 0.43
USHBP1-202ENST00000324554 MAPK8IP2Q13387 824 aaPredicted RBP17.72■□□□□ 0.43
USHBP1-202ENST00000324554 DLGAP5Q15398 846 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 RBM26Q5T8P6 1007 aaKnown RBP17.72■□□□□ 0.43
USHBP1-202ENST00000324554 SLFN13Q68D06 897 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 ZNF572Q7Z3I7 529 aaPredicted RBP17.72■□□□□ 0.43
USHBP1-202ENST00000324554 SRLQ86TD4 932 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 GPBP1Q86WP2 473 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 NELFCDQ8IXH7 590 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 SPATA4Q8NEY3 305 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 AFAP1L1Q8TED9 768 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 AENQ8WTP8 325 aaKnown RBP17.72■□□□□ 0.43
USHBP1-202ENST00000324554 SCFD1Q8WVM8 642 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 CSRNP1Q96S65 589 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 OSBPL9Q96SU4 736 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 NYAP2Q9P242 653 aa17.72■□□□□ 0.43
USHBP1-202ENST00000324554 SSU72P8A0A1W2PR75 194 aa17.71■□□□□ 0.43
USHBP1-202ENST00000324554 SPDYE2BA6NHP3 402 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms