RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TLR2O60603 784 aa18.34■□□□□ 0.53
VPS54-201ENST00000272322 USP14P54578 494 aa18.34■□□□□ 0.53
VPS54-201ENST00000272322 IGKV6D-41A0A0C4DH26 115 aa18.34■□□□□ 0.53
VPS54-201ENST00000272322 KCNH2Q12809 1159 aa18.34■□□□□ 0.53
VPS54-201ENST00000272322 FOXR1Q6PIV2 292 aa18.34■□□□□ 0.53
VPS54-201ENST00000272322 MSANTD4Q8NCY6 345 aa18.34■□□□□ 0.53
VPS54-201ENST00000272322 SEPT11Q9NVA2 429 aaKnown RBP18.34■□□□□ 0.53
VPS54-201ENST00000272322 MYO1AQ9UBC5 1043 aa18.34■□□□□ 0.53
VPS54-201ENST00000272322 SMCHD1A6NHR9 2005 aa18.34■□□□□ 0.53
VPS54-201ENST00000272322 A0A087X0T9 212 aa18.33■□□□□ 0.53
VPS54-201ENST00000272322 EML1O00423 815 aa18.33■□□□□ 0.53
VPS54-201ENST00000272322 FAM228BP0C875 321 aa18.33■□□□□ 0.53
VPS54-201ENST00000272322 KLHL30Q0D2K2 578 aa18.33■□□□□ 0.53
VPS54-201ENST00000272322 RBM26Q5T8P6 1007 aaKnown RBP18.33■□□□□ 0.53
VPS54-201ENST00000272322 SFMBT2Q5VUG0 894 aa18.33■□□□□ 0.53
VPS54-201ENST00000272322 CERS3Q8IU89 383 aa18.33■□□□□ 0.53
VPS54-201ENST00000272322 PDGFDQ9GZP0 370 aaPredicted RBP18.33■□□□□ 0.53
VPS54-201ENST00000272322 SWAP70Q9UH65 585 aa18.33■□□□□ 0.53
VPS54-201ENST00000272322 DNM3Q9UQ16 869 aa18.33■□□□□ 0.53
VPS54-201ENST00000272322 CASZ1Q86V15 1759 aa18.33■□□□□ 0.53
VPS54-201ENST00000272322 COL22A1Q8NFW1 1626 aaPredicted RBP18.33■□□□□ 0.53
VPS54-201ENST00000272322 KLRC1P26715 233 aa18.33■□□□□ 0.52
VPS54-201ENST00000272322 DGKZQ13574 1117 aa18.33■□□□□ 0.52
VPS54-201ENST00000272322 CCDC170Q8IYT3 715 aa18.33■□□□□ 0.52
VPS54-201ENST00000272322 NLGN1Q8N2Q7 840 aa18.33■□□□□ 0.52
VPS54-201ENST00000272322 BAP1Q92560 729 aa18.33■□□□□ 0.52
VPS54-201ENST00000272322 AMNQ9BXJ7 453 aa18.33■□□□□ 0.52
VPS54-201ENST00000272322 NMT1P30419 496 aaKnown RBP18.33■□□□□ 0.52
VPS54-201ENST00000272322 ALDH1B1P30837 517 aa18.33■□□□□ 0.52
VPS54-201ENST00000272322 PPP4R3AQ6IN85 833 aa18.33■□□□□ 0.52
VPS54-201ENST00000272322 FAM204AQ9H8W3 233 aa18.33■□□□□ 0.52
VPS54-201ENST00000272322 PALMO75781 387 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 FGFR1OPO95684 399 aaKnown RBP18.32■□□□□ 0.52
VPS54-201ENST00000272322 TRADDQ15628 312 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 TMEM119Q4V9L6 283 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 KLHL7Q8IXQ5 586 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 CPXCR1Q8N123 301 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 RETREG2Q8NC44 543 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 ELMO3Q96BJ8 720 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 SH2D4AQ9H788 454 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 MAP2K7O14733 419 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 EIF3JO75822 258 aaKnown RBP18.32■□□□□ 0.52
VPS54-201ENST00000272322 LRRC63Q05C16 580 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 SLC9C1Q4G0N8 1177 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 OSBPL9Q96SU4 736 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 RUSC1Q9BVN2 902 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 DHX36Q9H2U1 1008 aaKnown RBP18.32■□□□□ 0.52
VPS54-201ENST00000272322 RAB21Q9UL25 225 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 DDX60LQ5H9U9 1706 aaKnown RBP18.32■□□□□ 0.52
VPS54-201ENST00000272322 PDE4CQ08493 712 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 COG2Q14746 738 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 LLGL1Q15334 1064 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 PDXDC1Q6P996 788 aa18.32■□□□□ 0.52
VPS54-201ENST00000272322 CETN3O15182 167 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 PPIP5K2O43314 1243 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 GGCXP38435 758 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 CLK2P49760 499 aaKnown RBP18.31■□□□□ 0.52
VPS54-201ENST00000272322 GUCY2FP51841 1108 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 KIAA1755Q5JYT7 1200 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 ADAT2Q7Z6V5 191 aaKnown RBP18.31■□□□□ 0.52
VPS54-201ENST00000272322 GLIS2Q9BZE0 524 aaPredicted RBP18.31■□□□□ 0.52
VPS54-201ENST00000272322 SORBS3O60504 671 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 NOL4O94818 638 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 CYP2J2P51589 502 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 PAPD7Q5XG87 772 aaKnown RBP18.31■□□□□ 0.52
VPS54-201ENST00000272322 CREG2Q8IUH2 290 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 MYCT1Q8N699 235 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 EHBP1Q8NDI1 1231 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 SPATA4Q8NEY3 305 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 TRIM58Q8NG06 486 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 ALS2CR12Q96Q35 445 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 CENPHQ9H3R5 247 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 RBM12Q9NTZ6 932 aaKnown RBP18.31■□□□□ 0.52
VPS54-201ENST00000272322 CHORDC1Q9UHD1 332 aaPredicted RBP18.31■□□□□ 0.52
VPS54-201ENST00000272322 SNX12Q9UMY4 172 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 WNK3Q9BYP7 1800 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 MSH4O15457 936 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 BMP3P12645 472 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 ZSCAN26Q16670 478 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 KCTD16Q68DU8 428 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 MASTLQ96GX5 879 aa18.31■□□□□ 0.52
VPS54-201ENST00000272322 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.31■□□□□ 0.52
VPS54-201ENST00000272322 MYH1P12882 1939 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 LTBP4Q8N2S1 1624 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 CCDC66A2RUB6 948 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 H0YIN7 160 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 POTEB2H3BUK9 544 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 RNF40O75150 1001 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 NT5C3AQ9H0P0 336 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 HDAC9Q9UKV0 1011 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 SYDE2Q5VT97 1194 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 SELENOOQ9BVL4 669 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 PPP1R1BQ9UD71 204 aaPredicted RBP18.3■□□□□ 0.52
VPS54-201ENST00000272322 JRKLQ9Y4A0 524 aa18.3■□□□□ 0.52
VPS54-201ENST00000272322 TBCAO75347 108 aaKnown RBP18.29■□□□□ 0.52
VPS54-201ENST00000272322 SMARCA1P28370 1054 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 PDE6BP35913 854 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 HHIPL2Q6UWX4 724 aa18.29■□□□□ 0.52
VPS54-201ENST00000272322 ARMCX3Q9UH62 379 aaPredicted RBP18.29■□□□□ 0.52
VPS54-201ENST00000272322 RGL2O15211 777 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms