RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 TAB3Q8N5C8 712 aaPredicted RBP11.65□□□□□ -0.54
CD44-201ENST00000263398 PCIF1Q9H4Z3 704 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 EFCC1Q9HA90 598 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 IFT122Q9HBG6 1241 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 ADAM21Q9UKJ8 722 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 CDHR2Q9BYE9 1310 aa11.65□□□□□ -0.54
CD44-201ENST00000263398 GDF11O95390 407 aa11.65□□□□□ -0.55
CD44-201ENST00000263398 GRAPQ13588 217 aa11.65□□□□□ -0.55
CD44-201ENST00000263398 MAP7Q14244 749 aa11.65□□□□□ -0.55
CD44-201ENST00000263398 TTBK2Q6IQ55 1244 aa11.65□□□□□ -0.55
CD44-201ENST00000263398 FOXP4Q8IVH2 680 aaPredicted RBP11.65□□□□□ -0.55
CD44-201ENST00000263398 RHOT2Q8IXI1 618 aa11.65□□□□□ -0.55
CD44-201ENST00000263398 GRAPLQ8TC17 118 aaPredicted RBP11.65□□□□□ -0.55
CD44-201ENST00000263398 CAMSAP1Q5T5Y3 1602 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 RASGRF2O14827 1237 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 DDIT3P35638 169 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 SLC7A5Q01650 507 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 TFDP1Q14186 410 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 ZKSCAN8Q15776 578 aaPredicted RBP11.64□□□□□ -0.55
CD44-201ENST00000263398 CC2D1AQ6P1N0 951 aaPredicted RBP11.64□□□□□ -0.55
CD44-201ENST00000263398 ENAHQ8N8S7 591 aaPredicted RBP11.64□□□□□ -0.55
CD44-201ENST00000263398 KLHL29Q96CT2 875 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 NOVA2Q9UNW9 492 aaKnown RBP11.64□□□□□ -0.55
CD44-201ENST00000263398 GABPAQ06546 454 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 SH2D4BQ5SQS7 431 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 CCHCR1Q8TD31 782 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 SLC5A4Q9NY91 659 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 CLRN2A0PK11 232 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 A6NJR5 290 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 BAG2O95816 211 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 CASP1P29466 404 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 SEMA3FQ13275 785 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 AP3B2Q13367 1082 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 SNX1Q13596 522 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 TRIM42Q8IWZ5 723 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 TCP11Q8WWU5 503 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 ADGRG1Q9Y653 693 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 VGLL3A8MV65 326 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 SORBS3O60504 671 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 CDC27P30260 824 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 GARSP41250 739 aaKnown RBP11.64□□□□□ -0.55
CD44-201ENST00000263398 PRCPP42785 496 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 PDE1BQ01064 536 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 DR1Q01658 176 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 TRIM68Q6AZZ1 485 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 TMEM47Q9BQJ4 181 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 NFU1Q9UMS0 254 aa11.64□□□□□ -0.55
CD44-201ENST00000263398 SNAP23O00161 211 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 LLGL1Q15334 1064 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 OXER1Q8TDS5 423 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 CEP72Q9P209 647 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 UBN2Q6ZU65 1347 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 LUC7L3O95232 432 aaKnown RBP11.63□□□□□ -0.55
CD44-201ENST00000263398 PRDX5P30044 214 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 SH3BGRP55822 239 aaPredicted RBP11.63□□□□□ -0.55
CD44-201ENST00000263398 MED10Q9BTT4 135 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 ACTR5Q9H9F9 607 aaPredicted RBP11.63□□□□□ -0.55
CD44-201ENST00000263398 DBNDD1Q9H9R9 158 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.63□□□□□ -0.55
CD44-201ENST00000263398 TRIM49BA6NDI0 452 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 USP14P54578 494 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 TRIM28Q13263 835 aaKnown RBP11.63□□□□□ -0.55
CD44-201ENST00000263398 ORC2Q13416 577 aaPredicted RBP11.63□□□□□ -0.55
CD44-201ENST00000263398 DNAJC24Q6P3W2 148 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 FAM160B2Q86V87 743 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 RFX6Q8HWS3 928 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 NME8Q8N427 588 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 ISCA1Q9BUE6 129 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 VCX3AQ9NNX9 186 aa11.63□□□□□ -0.55
CD44-201ENST00000263398 INO80B-WBP1J3KQ70 363 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 SART1O43290 800 aaKnown RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 SLCO1A2P46721 670 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 NXNQ6DKJ4 435 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 NCAPG2Q86XI2 1143 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 AP1M1Q9BXS5 423 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 INO80BQ9C086 356 aaPredicted RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 COA1Q9GZY4 146 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 ZMYND12Q9H0C1 365 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 CD2APQ9Y5K6 639 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 PTPRMP28827 1452 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 XPOTO43592 962 aaKnown RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 HNRNPH2P55795 449 aaKnown RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 C6orf118Q5T5N4 469 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 SHC4Q6S5L8 630 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 KSR1Q8IVT5 923 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 ANKRD36BP1Q96IX9 119 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 DCP1AQ9NPI6 582 aaPredicted RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 CLTCQ00610 1675 aaKnown RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 MIF4GDA9UHW6 222 aaKnown RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 MCF2LO15068 1137 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 FGGP02679 453 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 GCKP35557 465 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 MSH2P43246 934 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 RWDD2BP57060 319 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 SESN3P58005 492 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 TBC1D10BQ4KMP7 808 aaPredicted RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 Q9H521 79 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 SPC25Q9HBM1 224 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 LMTK2Q8IWU2 1503 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 ZNF335Q9H4Z2 1342 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms