RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 FKBP3Q00688 224 aaKnown RBP18.19■□□□□ 0.5
ZNF541-201ENST00000263351 CFAP58Q5T655 872 aa18.19■□□□□ 0.5
ZNF541-201ENST00000263351 IQCKQ8N0W5 287 aa18.19■□□□□ 0.5
ZNF541-201ENST00000263351 DDX47Q9H0S4 455 aaKnown RBP18.19■□□□□ 0.5
ZNF541-201ENST00000263351 GDF3Q9NR23 364 aa18.19■□□□□ 0.5
ZNF541-201ENST00000263351 SFI1A8K8P3 1242 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 MPHOSPH10O00566 681 aaKnown RBP18.18■□□□□ 0.5
ZNF541-201ENST00000263351 PRLRP16471 622 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 HLTFQ14527 1009 aaKnown RBP eCLIP18.18■□□□□ 0.5
ZNF541-201ENST00000263351 NAB2Q15742 525 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 ARSHQ5FYA8 562 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 NAA35Q5VZE5 725 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 MAATS1Q7Z4T9 603 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 ADAT2Q7Z6V5 191 aaKnown RBP18.18■□□□□ 0.5
ZNF541-201ENST00000263351 RBM46Q8TBY0 533 aaKnown RBP18.18■□□□□ 0.5
ZNF541-201ENST00000263351 TSG101Q99816 390 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 CEP72Q9P209 647 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 PCDHA12Q9UN75 941 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 PCDHA2Q9Y5H9 948 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 GPR75-ASB3A0A0A6YYF3 556 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 DCDC2CA8MYV0 355 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 CASP4P49662 377 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 KCNH2Q12809 1159 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 ADAM9Q13443 819 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 DCAF17Q5H9S7 520 aaPredicted RBP18.18■□□□□ 0.5
ZNF541-201ENST00000263351 EMBQ6PCB8 327 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 KSR1Q8IVT5 923 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 LZTS2Q9BRK4 669 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 POLLQ9UGP5 575 aa18.18■□□□□ 0.5
ZNF541-201ENST00000263351 TMCO5BA8MYB1 307 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 GOLGA8KD6RF30 607 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 SERPING1P05155 500 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 PLA2G4BP0C869 781 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 PABPC4Q13310 644 aaKnown RBP eCLIP18.17■□□□□ 0.5
ZNF541-201ENST00000263351 GRAPQ13588 217 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 CEP85LQ5SZL2 805 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 MEI1Q5TIA1 1274 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 KCNV1Q6PIU1 500 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 ZNF804AQ7Z570 1209 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 TRIM59Q8IWR1 403 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 GRAPLQ8TC17 118 aaPredicted RBP18.17■□□□□ 0.5
ZNF541-201ENST00000263351 PPM1EQ8WY54 764 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 CAVIN3Q969G5 261 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 CELF4Q9BZC1 486 aaKnown RBP18.17■□□□□ 0.5
ZNF541-201ENST00000263351 GANQ9H2C0 597 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 PLAAQ9Y263 795 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 CLIC2O15247 247 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 ECHS1P30084 290 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 GTF2IP78347 998 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 HDLBPQ00341 1268 aaKnown RBP18.17■□□□□ 0.5
ZNF541-201ENST00000263351 CYP4A11Q02928 519 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 SLC18A3Q16572 532 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 COBLL1Q53SF7 1204 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 ZFPM1Q8IX07 1006 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 KCTD10Q9H3F6 313 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 NR2E1Q9Y466 385 aa18.17■□□□□ 0.5
ZNF541-201ENST00000263351 CEP104O60308 925 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 RPS6KA4O75676 772 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 ERLIN2O94905 339 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 MYBP10242 640 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 HOXD13P35453 343 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 TRIM31Q9BZY9 425 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 EMILIN3Q9NT22 766 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 CCNL1Q9UK58 526 aaPredicted RBP18.16■□□□□ 0.5
ZNF541-201ENST00000263351 DAGLAQ9Y4D2 1042 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 SSU72P8A0A1W2PR75 194 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 CYP11B2P19099 503 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 NR2F2P24468 414 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 TMOD1P28289 359 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 GSTO1P78417 241 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 UAP1Q16222 522 aaPredicted RBP18.16■□□□□ 0.5
ZNF541-201ENST00000263351 SPRED3Q2MJR0 410 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 EFCAB13Q8IY85 973 aa18.16■□□□□ 0.5
ZNF541-201ENST00000263351 RBAK-RBAKDNI3L0D1 243 aa18.15■□□□□ 0.5
ZNF541-201ENST00000263351 OPA1O60313 960 aa18.15■□□□□ 0.5
ZNF541-201ENST00000263351 KRT18P05783 430 aaKnown RBP18.15■□□□□ 0.5
ZNF541-201ENST00000263351 LSP1P33241 339 aa18.15■□□□□ 0.5
ZNF541-201ENST00000263351 TCERG1LQ5VWI1 586 aa18.15■□□□□ 0.5
ZNF541-201ENST00000263351 IFT20Q8IY31 132 aa18.15■□□□□ 0.5
ZNF541-201ENST00000263351 PPANQ9NQ55 473 aaKnown RBP18.15■□□□□ 0.5
ZNF541-201ENST00000263351 BCCIPQ9P287 314 aaKnown RBP eCLIP18.15■□□□□ 0.5
ZNF541-201ENST00000263351 IBSPP21815 317 aaPredicted RBP18.15■□□□□ 0.5
ZNF541-201ENST00000263351 ITIH3Q06033 890 aa18.15■□□□□ 0.5
ZNF541-201ENST00000263351 ASIC2Q16515 512 aa18.15■□□□□ 0.5
ZNF541-201ENST00000263351 ICE2Q659A1 982 aa18.15■□□□□ 0.5
ZNF541-201ENST00000263351 CYP2W1Q8TAV3 490 aa18.15■□□□□ 0.5
ZNF541-201ENST00000263351 SMCHD1A6NHR9 2005 aa18.14■□□□□ 0.5
ZNF541-201ENST00000263351 SHTN1A0MZ66 631 aa18.14■□□□□ 0.49
ZNF541-201ENST00000263351 TULP1O00294 542 aaPredicted RBP18.14■□□□□ 0.49
ZNF541-201ENST00000263351 ZBTB39O15060 712 aa18.14■□□□□ 0.49
ZNF541-201ENST00000263351 EPS15P42566 896 aa18.14■□□□□ 0.49
ZNF541-201ENST00000263351 UBAP2Q5T6F2 1119 aaKnown RBP18.14■□□□□ 0.49
ZNF541-201ENST00000263351 DPY19L2P1Q6NXN4 242 aa18.14■□□□□ 0.49
ZNF541-201ENST00000263351 USP38Q8NB14 1042 aa18.14■□□□□ 0.49
ZNF541-201ENST00000263351 AMACRQ9UHK6 382 aa18.14■□□□□ 0.49
ZNF541-201ENST00000263351 A0A087WUV0 522 aaPredicted RBP18.14■□□□□ 0.49
ZNF541-201ENST00000263351 C6orf229H3BNL8 230 aa18.14■□□□□ 0.49
ZNF541-201ENST00000263351 NR1D1P20393 614 aa18.14■□□□□ 0.49
ZNF541-201ENST00000263351 NFIAQ12857 509 aa18.14■□□□□ 0.49
ZNF541-201ENST00000263351 IRF2BP2Q7Z5L9 587 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms