RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PNMA6FA0A0J9YX94 578 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 ADRA2BP18089 450 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 CCT5P48643 541 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 YWHAGP61981 247 aaKnown RBP eCLIP20.69■□□□□ 0.9
UPF1-201ENST00000262803 ERFEQ4G0M1 354 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 TTC19Q6DKK2 380 aaPredicted RBP20.68■□□□□ 0.9
UPF1-201ENST00000262803 KCTD1Q719H9 257 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 MAGOHBQ96A72 148 aaKnown RBP20.68■□□□□ 0.9
UPF1-201ENST00000262803 PARVGQ9HBI0 331 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 EPB41L5Q9HCM4 733 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 SORBS3O60504 671 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 PDE1BQ01064 536 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 DNAJC24Q6P3W2 148 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 SIX6OS1Q8N1H7 587 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 IQCB1Q15051 598 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 SPICE1Q8N0Z3 855 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 GBP7Q8N8V2 638 aaPredicted RBP20.68■□□□□ 0.9
UPF1-201ENST00000262803 LRGUKQ96M69 825 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 ASNSP08243 561 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 FDX1P10109 184 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 NLRP7Q8WX94 980 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 ZNF653Q96CK0 615 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 PARD6BQ9BYG5 372 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 MAD1L1Q9Y6D9 718 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 IFRD2Q12894 506 aaPredicted RBP20.68■□□□□ 0.9
UPF1-201ENST00000262803 EPHA10Q5JZY3 1008 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 CCDC170Q8IYT3 715 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 TTC39CQ8N584 583 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 PANX2Q96RD6 677 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 BRIP1Q9BX63 1249 aa20.68■□□□□ 0.9
UPF1-201ENST00000262803 USP17L8P0C7I0 530 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 CNPY4Q8N129 248 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 TTLL6Q8N841 843 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 TTLL11Q8NHH1 800 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 TACO1Q9BSH4 297 aaKnown RBP20.67■□□□□ 0.9
UPF1-201ENST00000262803 MTA3Q9BTC8 594 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 DIS3Q9Y2L1 958 aaKnown RBP20.67■□□□□ 0.9
UPF1-201ENST00000262803 SCINQ9Y6U3 715 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 SART1O43290 800 aaKnown RBP20.67■□□□□ 0.9
UPF1-201ENST00000262803 NDUFA10O95299 355 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 CPP00450 1065 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 ELF1P32519 619 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 SLC16A2P36021 539 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 DGKHQ86XP1 1220 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 NEK9Q8TD19 979 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 DHX38Q92620 1227 aaKnown RBP20.67■□□□□ 0.9
UPF1-201ENST00000262803 COA7Q96BR5 231 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 GJB4Q9NTQ9 266 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 ARHGAP42A6NI28 874 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 LRRC63Q05C16 580 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 EP400NLQ6ZTU2 488 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 STRBPQ96SI9 672 aaKnown RBP20.67■□□□□ 0.9
UPF1-201ENST00000262803 IGKV5-2P06315 115 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 PLCG1P19174 1290 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 USP17L2Q6R6M4 530 aa20.67■□□□□ 0.9
UPF1-201ENST00000262803 RPF1Q9H9Y2 349 aaKnown RBP20.67■□□□□ 0.9
UPF1-201ENST00000262803 RCAN1P53805 252 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 RNF139Q8WU17 664 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 CPSF2Q9P2I0 782 aaKnown RBP20.66■□□□□ 0.9
UPF1-201ENST00000262803 ARHGAP31Q2M1Z3 1444 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 TARBP1Q13395 1621 aaKnown RBP20.66■□□□□ 0.9
UPF1-201ENST00000262803 THOC5Q13769 683 aaKnown RBP20.66■□□□□ 0.9
UPF1-201ENST00000262803 SARM1Q6SZW1 724 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 MXD3Q9BW11 206 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 CLRN2A0PK11 232 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 CXCR5P32302 372 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 EIF4A3P38919 411 aaKnown RBP20.66■□□□□ 0.9
UPF1-201ENST00000262803 MCAMP43121 646 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 CLCN6P51797 869 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 ARID5BQ14865 1188 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 DYNLL2Q96FJ2 89 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 NHEJ1Q9H9Q4 299 aaPredicted RBP20.66■□□□□ 0.9
UPF1-201ENST00000262803 EFCC1Q9HA90 598 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 TXNDC9O14530 226 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 HIP1RO75146 1068 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 UBXN2AP68543 259 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 MMEL1Q495T6 779 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 ARHGEF18Q6ZSZ5 1173 aa20.66■□□□□ 0.9
UPF1-201ENST00000262803 PPFIA2O75334 1257 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 SKA2Q8WVK7 121 aaPredicted RBP20.65■□□□□ 0.9
UPF1-201ENST00000262803 SLC10A4Q96EP9 437 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 APOL6Q9BWW8 343 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 DAAM1Q9Y4D1 1078 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 SGK1O00141 431 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 PGRMC1O00264 195 aaKnown RBP20.65■□□□□ 0.9
UPF1-201ENST00000262803 ECEL1O95672 775 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 C2orf54Q08AI8 447 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 KAZNQ674X7 775 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 FAM133AQ8N9E0 248 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 FAM149B1Q96BN6 582 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 SLMAPQ14BN4 828 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 PRPF38AQ8NAV1 312 aaKnown RBP20.65■□□□□ 0.9
UPF1-201ENST00000262803 MOCS3O95396 460 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 COG7P83436 770 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 CYP27A1Q02318 531 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 KRT39Q6A163 491 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 C4orf50Q6ZRC1 276 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 LMCD1Q9NZU5 365 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 THEGQ9P2T0 379 aa20.65■□□□□ 0.9
UPF1-201ENST00000262803 PTPN22Q9Y2R2 807 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms