RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 IRX4P78413 519 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 HSPH1Q92598 858 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 RAVER2Q9HCJ3 691 aaKnown RBP20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 DAAM1Q9Y4D1 1078 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 TBC1D10CQ8IV04 446 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 CDKL2Q92772 493 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 CUEDC2Q9H467 287 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 MUM1L1Q5H9M0 696 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 ATP6V1E2Q96A05 226 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 LRRD1A4D1F6 860 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 IFNAR1P17181 557 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 UBN1Q9NPG3 1134 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 MAGI3Q5TCQ9 1506 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 ARID5BQ14865 1188 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 PSDA5PKW4 1024 aaPredicted RBP20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L15C9J2P7 530 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L13C9JLJ4 530 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L11C9JVI0 530 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L18D6R9N7 530 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L22D6RA61 530 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L17D6RBQ6 530 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L19D6RCP7 530 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L20D6RJB6 530 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 CPP00450 1065 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 PTPREP23469 700 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 GARSP41250 739 aaKnown RBP20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 MXI1P50539 228 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 RASSF2P50749 326 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L24Q0WX57 530 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 USP17L6PQ6QN14 398 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 GDAP1Q8TB36 358 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 LRRC4Q9HBW1 653 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 OPHN1O60890 802 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 RESTQ13127 1097 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 MAGEF1Q9HAY2 307 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 INTS9Q9NV88 658 aaKnown RBP20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 BSDC1Q9NW68 430 aaPredicted RBP20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 ANGPTL3Q9Y5C1 460 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 AATKQ6ZMQ8 1374 aa20.23■□□□□ 0.83
SMARCC1-201ENST00000254480 PNMA6FA0A0J9YX94 578 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 TRIM49BA6NDI0 452 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 ARHGAP4P98171 946 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 CYB5R4Q7L1T6 521 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 MSTO1Q9BUK6 570 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 DHX36Q9H2U1 1008 aaKnown RBP20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 MYL3P08590 195 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 PASD1Q8IV76 773 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 SUDS3Q9H7L9 328 aaPredicted RBP20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 PLEKHG1Q9ULL1 1385 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 XPOTO43592 962 aaKnown RBP20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 GPC4O75487 556 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 TMEM260Q9NX78 707 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 SRPRBQ9Y5M8 271 aaKnown RBP20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 PSAPP07602 524 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 RNF207Q6ZRF8 634 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 TRMT2AQ8IZ69 625 aaKnown RBP20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 MARCH10Q8NA82 808 aaPredicted RBP20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 SLC10A4Q96EP9 437 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 FRMD3A2A2Y4 597 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 F5H423 210 aaPredicted RBP20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 CYP27B1O15528 508 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 GCFC2P16383 781 aaKnown RBP20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 C10orf76Q5T2E6 689 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 POLIQ9UNA4 740 aa20.22■□□□□ 0.83
SMARCC1-201ENST00000254480 MCF2LO15068 1137 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 CYP2E1P05181 493 aaPredicted RBP20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 CRKP46108 304 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 ZBTB7AO95365 584 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 STRBPQ96SI9 672 aaKnown RBP20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 TMEM206Q9H813 350 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 RWDD2AQ9UIY3 292 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 NPR1P16066 1061 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 ASPHQ12797 758 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 TTC30BQ8N4P2 665 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 TTLL6Q8N841 843 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 RCOR1Q9UKL0 485 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 PCDHA13Q9Y5I0 950 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 ERVV-1B6SEH8 477 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 PPP2R5EQ16537 467 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 TBC1D9BQ66K14 1250 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 OXER1Q8TDS5 423 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 MICAL1Q8TDZ2 1067 aa20.21■□□□□ 0.83
SMARCC1-201ENST00000254480 IFT88Q13099 833 aa20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 ARHGEF18Q6ZSZ5 1173 aa20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 ABCB11O95342 1321 aa20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.2■□□□□ 0.825e-18■□□□□ 8.8
SMARCC1-201ENST00000254480 ZNF500O60304 480 aaPredicted RBP20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 ECEL1O95672 775 aa20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 SMAD1Q15797 465 aaKnown RBP20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 ALKBH8Q96BT7 664 aaKnown RBP20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 DDX27Q96GQ7 796 aaKnown RBP20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 VGLL3A8MV65 326 aa20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 K7ERI5 159 aa20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 NECTIN1Q15223 517 aa20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 CELF1Q92879 486 aaKnown RBP20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 RMDN2Q96LZ7 410 aa20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 ADAMTS1Q9UHI8 967 aa20.2■□□□□ 0.82
SMARCC1-201ENST00000254480 IPO11Q9UI26 975 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms