RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 CDK8P49336 464 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 FKBP3Q00688 224 aaKnown RBP13.13□□□□□ -0.31
USHBP1-201ENST00000252597 GRM4Q14833 912 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 NFIXQ14938 502 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 DPP8Q6V1X1 898 aaPredicted RBP13.13□□□□□ -0.31
USHBP1-201ENST00000252597 NLRP14Q86W24 1093 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 ERGIC2Q96RQ1 377 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 MMTAG2Q9BU76 263 aaKnown RBP13.13□□□□□ -0.31
USHBP1-201ENST00000252597 BAIAP2L1Q9UHR4 511 aa13.13□□□□□ -0.31
USHBP1-201ENST00000252597 ZC3H4Q9UPT8 1303 aaKnown RBP13.12□□□□□ -0.31
USHBP1-201ENST00000252597 TJP1Q07157 1748 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 DOT1LQ8TEK3 1739 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 PPP1R37O75864 691 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 GFPT2O94808 682 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 FECHP22830 423 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 COASYQ13057 564 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 DGKHQ86XP1 1220 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 TRIM51Q9BSJ1 452 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 QTRT2Q9H974 415 aaKnown RBP13.12□□□□□ -0.31
USHBP1-201ENST00000252597 DNAJC17Q9NVM6 304 aaKnown RBP13.12□□□□□ -0.31
USHBP1-201ENST00000252597 DDX25Q9UHL0 483 aaKnown RBP13.12□□□□□ -0.31
USHBP1-201ENST00000252597 FBXL5Q9UKA1 691 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 POTEFA5A3E0 1075 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 POTEIP0CG38 1075 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 MAGOHP61326 146 aaKnown RBP13.12□□□□□ -0.31
USHBP1-201ENST00000252597 POTEGQ6S5H5 508 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 POTEEQ6S8J3 1075 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 UNC13DQ70J99 1090 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 MAGOHBQ96A72 148 aaKnown RBP13.12□□□□□ -0.31
USHBP1-201ENST00000252597 BCAS3Q9H6U6 928 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 BLOC1S4Q9NUP1 217 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 PKD2L1Q9P0L9 805 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 SIK3Q9Y2K2 1263 aa13.12□□□□□ -0.31
USHBP1-201ENST00000252597 RTCBQ9Y3I0 505 aaKnown RBP13.12□□□□□ -0.31
USHBP1-201ENST00000252597 LRRN2O75325 713 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 VIMP08670 466 aaKnown RBP13.11□□□□□ -0.31
USHBP1-201ENST00000252597 TCP10Q12799 353 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 CD2APQ9Y5K6 639 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 BAZ2AQ9UIF9 1905 aaKnown RBP13.11□□□□□ -0.31
USHBP1-201ENST00000252597 CETN3O15182 167 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 TTI1O43156 1089 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 FLT3P36888 993 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 SCNN1DP51172 638 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 KCNMA1Q12791 1236 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 ALS2CLQ60I27 953 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 CCDC91Q7Z6B0 441 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 DYDC1Q8WWB3 177 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 PNMA5Q96PV4 448 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 MTA3Q9BTC8 594 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 DCDC2CA8MYV0 355 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 MEFVO15553 781 aaPredicted RBP13.11□□□□□ -0.31
USHBP1-201ENST00000252597 SART1O43290 800 aaKnown RBP13.11□□□□□ -0.31
USHBP1-201ENST00000252597 RPS6KA5O75582 802 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 UFL1O94874 794 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 RASA1P20936 1047 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 ZNF76P36508 570 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 RBM5P52756 815 aaKnown RBP eCLIP13.11□□□□□ -0.31
USHBP1-201ENST00000252597 PTK2Q05397 1052 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 KCNH2Q12809 1159 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 ECM1Q16610 540 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 CCDC38Q502W7 563 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 PRR16Q569H4 304 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 MYCBPQ99417 103 aaPredicted RBP13.11□□□□□ -0.31
USHBP1-201ENST00000252597 C7orf25Q9BPX7 421 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 GRIN2DO15399 1336 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 MYH13Q9UKX3 1938 aa13.11□□□□□ -0.31
USHBP1-201ENST00000252597 TLR2O60603 784 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 PLTPP55058 493 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 UBXN2AP68543 259 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 CENPPQ6IPU0 288 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 ALKBH5Q6P6C2 394 aaKnown RBP13.1□□□□□ -0.31
USHBP1-201ENST00000252597 BARGINQ6ZT62 677 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 ATP6V1G3Q96LB4 118 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 EMILIN3Q9NT22 766 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 HAUS2Q9NVX0 235 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 C4AP0C0L4 1744 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 C4BP0C0L5 1744 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 GCNT3O95395 438 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 SERPING1P05155 500 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 CACNB3P54284 484 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 ERVK-9P63128 1117 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 MFSD14BQ5SR56 506 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 OTUD6AQ7L8S5 288 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 CCDC65Q8IXS2 484 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 TCP11Q8WWU5 503 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 AK8Q96MA6 479 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 PTPN22Q9Y2R2 807 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 FLT1P17948 1338 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 CLTAP09496 248 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 MDH1P40925 334 aaKnown RBP13.1□□□□□ -0.31
USHBP1-201ENST00000252597 PPP1R7Q15435 360 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 FAM133BQ5BKY9 247 aaKnown RBP13.1□□□□□ -0.31
USHBP1-201ENST00000252597 MYCBPAPQ8TBZ2 947 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 RAD54LQ92698 747 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 ATP6V0A2Q9Y487 856 aa13.1□□□□□ -0.31
USHBP1-201ENST00000252597 HSD17B3P37058 310 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 VPS41P49754 854 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 TPTE2Q6XPS3 522 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 BAP1Q92560 729 aa13.09□□□□□ -0.31
USHBP1-201ENST00000252597 TACO1Q9BSH4 297 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms