RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	UBA1	P22515	1024 aa	Known RBP	4.6	□□□□□ -1.67
DEG1	YFL001W	SPC34	P36131	295 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	STN1	P38960	494 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	RTS2	P40962	232 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	YNR068C	P53754	272 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	YNL234W	P53857	426 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	YNL181W	P53878	407 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	YDR541C	Q03049	344 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	PRP3	Q03338	469 aa	Predicted RBP	4.6	□□□□□ -1.67
DEG1	YFL001W	SLD5	Q03406	294 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	IVY1	Q04934	453 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	GLO2	Q05584	274 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	BUG1	Q12191	341 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	RUP1	Q12242	671 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	YSP2	Q06681	1438 aa		4.6	□□□□□ -1.67
DEG1	YFL001W	PGK1	P00560	416 aa	Known RBP	4.59	□□□□□ -1.67
DEG1	YFL001W	YMR124W	P39523	943 aa	Known RBP	4.59	□□□□□ -1.67
DEG1	YFL001W	YIL089W	P40500	205 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	YIL024C	P40543	189 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	GAT1	P43574	510 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	RIP-Chip
DEG1	YFL001W	PHO86	P46956	311 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	EFM3	P47163	339 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	DSL1	P53847	754 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	YNL143C	P53908	130 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	AQR1	P53943	586 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	ERG13	P54839	491 aa	Known RBP	4.59	□□□□□ -1.67
DEG1	YFL001W	SPH1	Q06160	661 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	THI20	Q08224	551 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	RKM5	Q12367	367 aa		4.59	□□□□□ -1.67
DEG1	YFL001W	ARO1	P08566	1588 aa	Known RBP	4.59	□□□□□ -1.67
DEG1	YFL001W	TAL1	P15019	335 aa	Known RBP	4.58	□□□□□ -1.68
DEG1	YFL001W	YAP1	P19880	650 aa	Known RBP	4.58	□□□□□ -1.68
DEG1	YFL001W	BUB3	P26449	341 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	HSP104	P31539	908 aa	Known RBP	4.58	□□□□□ -1.68
DEG1	YFL001W	NDI1	P32340	513 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	PDR3	P33200	976 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	SUR1	P33300	382 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	ERG7	P38604	731 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	GPI16	P38875	610 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	GAT2	P40209	560 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	CSM2	P40465	213 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	YPS6	P40583	537 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	ELP2	P42935	788 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	TRS85	P46944	698 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	ASN2	P49090	572 aa	Known RBP	4.58	□□□□□ -1.68
DEG1	YFL001W	UTP6	Q02354	440 aa	Known RBP	4.58	□□□□□ -1.68
DEG1	YFL001W	IZH1	Q03419	316 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	TAF12	Q03761	539 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	BNA5	Q05979	453 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	RTC5	Q12108	567 aa	Known RBP	4.58	□□□□□ -1.68
DEG1	YFL001W	SRN2	Q99176	213 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	YBT1	P32386	1661 aa		4.58	□□□□□ -1.68
DEG1	YFL001W	CRM1	P30822	1084 aa	Known RBP	4.57	□□□□□ -1.68
DEG1	YFL001W	SMY1	P32364	656 aa	Known RBP	4.57	□□□□□ -1.68
DEG1	YFL001W	SRB2	P34162	210 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	OSH3	P38713	996 aa	Known RBP	4.57	□□□□□ -1.68
DEG1	YFL001W	RRP4	P38792	359 aa	Known RBP	4.57	□□□□□ -1.68
DEG1	YFL001W	PCL7	P40186	285 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	RPA34	P47006	233 aa	Predicted RBP	4.57	□□□□□ -1.68
DEG1	YFL001W	YIP5	P53108	310 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	PIB2	P53191	635 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	YIF1	P53845	314 aa	Known RBP	4.57	□□□□□ -1.68
DEG1	YFL001W	SAM50	P53969	484 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	MSS11	Q03825	758 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	YDR387C	Q04162	555 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	NOP6	Q07623	225 aa	Known RBP	4.57	□□□□□ -1.68
DEG1	YFL001W	NSE1	Q07913	336 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	GSH2	Q08220	491 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	ATX2	Q12067	313 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	BSC1	Q12140	328 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	LSP1	Q12230	341 aa	Known RBP	4.57	□□□□□ -1.68
DEG1	YFL001W	SFG1	Q12507	346 aa		4.57	□□□□□ -1.68
DEG1	YFL001W	DOP1	Q03921	1698 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	HIS4	P00815	799 aa	Known RBP	4.56	□□□□□ -1.68
DEG1	YFL001W	YER190C-B	P0CX94	160 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	YEL077W-A	P0CX95	160 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	YGR296C-B	P0CX96	160 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	YPL283W-B	P0CX97	160 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	YPR204C-A	P0CX98	160 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	RPI1	P23250	407 aa	Known RBP	4.56	□□□□□ -1.68
DEG1	YFL001W	RDS1	P25611	832 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	PHO91	P27514	894 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	APE2	P32454	952 aa	Known RBP	4.56	□□□□□ -1.68
DEG1	YFL001W	ECM25	P32525	599 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	FLO5	P38894	1075 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	ROG1	P53118	685 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	VTI1	Q04338	217 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	RBA50	Q04418	439 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	RRP9	Q06506	573 aa	Known RBP	4.56	□□□□□ -1.68
DEG1	YFL001W	IPK1	Q06667	281 aa		4.56	□□□□□ -1.68
DEG1	YFL001W	ILV5	P06168	395 aa	Known RBP	4.55	□□□□□ -1.68
DEG1	YFL001W	SCH9	P11792	824 aa	Known RBP	4.55	□□□□□ -1.68
DEG1	YFL001W	ACH1	P32316	526 aa		4.55	□□□□□ -1.68
DEG1	YFL001W	VPS17	P32913	551 aa		4.55	□□□□□ -1.68
DEG1	YFL001W	ECM15	P35195	104 aa		4.55	□□□□□ -1.68
DEG1	YFL001W	SCO2	P38072	301 aa		4.55	□□□□□ -1.68
DEG1	YFL001W	PCH2	P38126	564 aa		4.55	□□□□□ -1.68
DEG1	YFL001W	SPC97	P38863	823 aa		4.55	□□□□□ -1.68
DEG1	YFL001W	PCF11	P39081	626 aa	Predicted RBP	4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms