RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TRPC1P48995 793 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 R3HDM1Q15032 1099 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ZCRB1Q8TBF4 217 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CAVIN3Q969G5 261 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TGS1Q96RS0 853 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CEP72Q9P209 647 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 SUCLA2Q9P2R7 463 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 PLEKHG1Q9ULL1 1385 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 EXOC1LA0A1B0GW35 172 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 LGALS16A8MUM7 142 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 KPNA4O00629 521 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 WDR62O43379 1518 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 CLCN2P51788 898 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 TRMT5Q32P41 509 aaKnown RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 GRAMD1BQ3KR37 738 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 E4F1Q66K89 784 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-220ENST00000641603 SH3TC1Q8TE82 1336 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF711Q9Y462 761 aa5.04□□□□□ -1.6
SCN1A-220ENST00000641603 MED14O60244 1454 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 CDH16O75309 829 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 KRT38O76015 456 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 GNAT1P11488 350 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MAGEA8P43361 318 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 GSCP56915 257 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 CDK17Q00537 523 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PURAQ00577 322 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 CCT6BQ92526 530 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 CSRNP1Q96S65 589 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.03□□□□□ -1.63e-8■□□□□ 9.3
SCN1A-220ENST00000641603 NHEJ1Q9H9Q4 299 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 BAG5Q9UL15 447 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MTO1Q9Y2Z2 717 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MAD1L1Q9Y6D9 718 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 CD109Q6YHK3 1445 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 A8MXQ7 604 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 SPAG6O75602 509 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 CCNE1P24864 410 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 NONOQ15233 471 aaKnown RBP eCLIP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 BEND3Q5T5X7 828 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RSPH3Q86UC2 560 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 SPDYE1Q8NFV5 336 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 ZBTB10Q96DT7 871 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MAGED4Q96JG8 741 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 TUBGCP2Q9BSJ2 902 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MED23Q9ULK4 1368 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 CES2O00748 559 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 INPP1P49441 399 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 TSGA10IPQ3SY00 556 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RASSF3Q86WH2 238 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PDZD8Q8NEN9 1154 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 POP5Q969H6 163 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RMI1Q9H9A7 625 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 TEKT2Q9UIF3 430 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 WDR17Q8IZU2 1322 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 GOLGA8CPA6NN73 597 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RPN1P04843 607 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PRR23CQ6ZRP0 262 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 NEK8Q86SG6 692 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RBBP8NLQ8NC74 664 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 DTX3LQ8TDB6 740 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 HPS3Q969F9 1004 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RNF26Q9BY78 433 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 ANAPC5Q9UJX4 755 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 NFU1Q9UMS0 254 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 SRPRBQ9Y5M8 271 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 FAM25AB3EWG3 89 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 FAM25CB3EWG5 89 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 FAM25GB3EWG6 89 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 DDAH1O94760 285 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 GJA8P48165 433 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 TUBA1BP68363 451 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 LBRQ14739 615 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 TUBA1AQ71U36 451 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 ARMCX6Q7L4S7 300 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 NBPF15Q8N660 670 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 STKLD1Q8NE28 680 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 INPP5DQ92835 1189 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PNMA2Q9UL42 364 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 SESN1Q9Y6P5 492 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 NPATQ14207 1427 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 A0A1W2PQJ5 194 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 DCAF8L1A6NGE4 600 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MT-ND3P03897 115 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 ILF2Q12905 390 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 ESCO1Q5FWF5 840 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 COL23A1Q86Y22 540 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 DHX40Q8IX18 779 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 AFAP1Q8N556 730 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 NUDT16Q96DE0 195 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MCM8Q9UJA3 840 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 DNAJC12Q9UKB3 198 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 A2MP01023 1474 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MAP2K7O14733 419 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 HIC1Q14526 733 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MMEL1Q495T6 779 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 TMEM154Q6P9G4 183 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 CRLF3Q8IUI8 442 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 FRMD8Q9BZ67 464 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 SNX12Q9UMY4 172 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms