RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 ETNPPLQ8TBG4 499 aa16.8■□□□□ 0.28
TRIM3-215ENST00000639856 HOOK2Q96ED9 719 aa16.8■□□□□ 0.28
TRIM3-215ENST00000639856 LRRC27Q9C0I9 530 aa16.8■□□□□ 0.28
TRIM3-215ENST00000639856 RPAP3Q9H6T3 665 aaPredicted RBP16.8■□□□□ 0.28
TRIM3-215ENST00000639856 MRPL11Q9Y3B7 192 aaKnown RBP16.8■□□□□ 0.28
TRIM3-215ENST00000639856 PES1O00541 588 aaKnown RBP16.79■□□□□ 0.28
TRIM3-215ENST00000639856 STAT3P40763 770 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 BACE1P56817 501 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 TRAF1Q13077 416 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 CENPPQ6IPU0 288 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 KCNK18Q7Z418 384 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 CPXCR1Q8N123 301 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 ZNF280CQ8ND82 737 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 ZNF397Q8NF99 534 aaPredicted RBP16.79■□□□□ 0.28
TRIM3-215ENST00000639856 HPS3Q969F9 1004 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 WDR18Q9BV38 432 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 SLC39A2Q9NP94 309 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 PPP2R3BQ9Y5P8 575 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 ZHX2Q9Y6X8 837 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 ABCB11O95342 1321 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 TTC26A0AVF1 554 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 HOXA7P31268 230 aaPredicted RBP16.79■□□□□ 0.28
TRIM3-215ENST00000639856 MAP3K9P80192 1104 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 ERCC6LQ2NKX8 1250 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 Q4G0T1 1027 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 GLIPR1L2Q4G1C9 344 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 DYMQ7RTS9 669 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 WNK4Q96J92 1243 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 CNOT6LQ96LI5 555 aaKnown RBP16.79■□□□□ 0.28
TRIM3-215ENST00000639856 RAVER2Q9HCJ3 691 aaKnown RBP16.79■□□□□ 0.28
TRIM3-215ENST00000639856 LZTFL1Q9NQ48 299 aa16.79■□□□□ 0.28
TRIM3-215ENST00000639856 ADARB2Q9NS39 739 aaKnown RBP16.79■□□□□ 0.28
TRIM3-215ENST00000639856 B4DLN1 442 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 ADM5C9JUS6 153 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 NFIBO00712 420 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 CIITAP33076 1130 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 HMGCS2P54868 508 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 DDX12PQ92771 950 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 EEF2KMTQ96G04 330 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 ZFP91Q96JP5 570 aaPredicted RBP16.78■□□□□ 0.28
TRIM3-215ENST00000639856 SEMA6BQ9H3T3 888 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 PPP1R9AQ9ULJ8 1098 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 CAPN11Q9UMQ6 739 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 LUC7L2Q9Y383 392 aaKnown RBP16.78■□□□□ 0.28
TRIM3-215ENST00000639856 USP14P54578 494 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 HYIQ5T013 277 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 GUF1Q8N442 669 aaKnown RBP16.78■□□□□ 0.28
TRIM3-215ENST00000639856 MNS1Q8NEH6 495 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 OR8K1Q8NGG5 319 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 SLC38A10Q9HBR0 1119 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 HOMER2Q9NSB8 354 aa16.78■□□□□ 0.28
TRIM3-215ENST00000639856 RLFQ13129 1914 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 PITPNM2Q9BZ72 1349 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 KDM3AQ9Y4C1 1321 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 MSH4O15457 936 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 CYP3A4P08684 503 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 EHHADHQ08426 723 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 SPIRE1Q08AE8 756 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 PSMD2Q13200 908 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 CLEC4DQ8WXI8 215 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 DNAJC7Q99615 494 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 IRX2Q9BZI1 471 aaPredicted RBP16.77■□□□□ 0.28
TRIM3-215ENST00000639856 NT5C3AQ9H0P0 336 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 AS3MTQ9HBK9 375 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 MRFAP1Q9Y605 127 aa16.77■□□□□ 0.28
TRIM3-215ENST00000639856 COL11A1P12107 1806 aaPredicted RBP16.77■□□□□ 0.27
TRIM3-215ENST00000639856 IGLV3-22A0A075B6J6 115 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 A0A0U1RQJ8 604 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 KIF5CO60282 957 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 USP2O75604 605 aaPredicted RBP16.76■□□□□ 0.27
TRIM3-215ENST00000639856 ALAS1P13196 640 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 IDEP14735 1019 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 ZNF76P36508 570 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 MTIF2P46199 727 aaKnown RBP16.76■□□□□ 0.27
TRIM3-215ENST00000639856 TBC1D8BQ0IIM8 1120 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 SUPT20HL1Q3ZLR7 823 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 FBXO38Q6PIJ6 1188 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 SLC30A10Q6XR72 485 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 SLFN12Q8IYM2 578 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 ACRBPQ8NEB7 543 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.76■□□□□ 0.27
TRIM3-215ENST00000639856 ATRIPQ8WXE1 791 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 CARD6Q9BX69 1037 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 COL20A1Q9P218 1284 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 OTOFQ9HC10 1997 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 EFCAB8A8MWE9 144 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 TADA3O75528 432 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 MUM1L1Q5H9M0 696 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 MIIPQ5JXC2 388 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 RETREG2Q8NC44 543 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 UBXN4Q92575 508 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 ATG4CQ96DT6 458 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 CHP1Q99653 195 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 NUP58Q9BVL2 599 aa16.76■□□□□ 0.27
TRIM3-215ENST00000639856 SLC26A4O43511 780 aa16.75■□□□□ 0.27
TRIM3-215ENST00000639856 HSD17B4P51659 736 aa16.75■□□□□ 0.27
TRIM3-215ENST00000639856 ARHGAP29Q52LW3 1261 aa16.75■□□□□ 0.27
TRIM3-215ENST00000639856 DCPSQ96C86 337 aaKnown RBP16.75■□□□□ 0.27
TRIM3-215ENST00000639856 DNAJC19Q96DA6 116 aa16.75■□□□□ 0.27
TRIM3-215ENST00000639856 NOC4LQ9BVI4 516 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms