RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 LTFP02788 710 aa6.72□□□□□ -1.33
CD44-239ENST00000639002 GRIN1Q05586 938 aa6.72□□□□□ -1.33
CD44-239ENST00000639002 SPATS1Q496A3 300 aa6.72□□□□□ -1.33
CD44-239ENST00000639002 CYP4F22Q6NT55 531 aa6.72□□□□□ -1.33
CD44-239ENST00000639002 ZCCHC14Q8WYQ9 949 aaKnown RBP6.72□□□□□ -1.33
CD44-239ENST00000639002 MBD6Q96DN6 1003 aa6.72□□□□□ -1.33
CD44-239ENST00000639002 SSBP3Q9BWW4 388 aaPredicted RBP6.72□□□□□ -1.33
CD44-239ENST00000639002 CNOT11Q9UKZ1 510 aaKnown RBP6.72□□□□□ -1.33
CD44-239ENST00000639002 INVSQ9Y283 1065 aa6.72□□□□□ -1.33
CD44-239ENST00000639002 NKRFO15226 690 aaKnown RBP eCLIP6.71□□□□□ -1.34
CD44-239ENST00000639002 ADRB1P08588 477 aa6.71□□□□□ -1.34
CD44-239ENST00000639002 GPR85P60893 370 aa6.71□□□□□ -1.34
CD44-239ENST00000639002 ZC3H6P61129 1189 aaKnown RBP6.71□□□□□ -1.34
CD44-239ENST00000639002 KIAA2012Q0VF49 1180 aa6.71□□□□□ -1.34
CD44-239ENST00000639002 FOXB2Q5VYV0 432 aa6.71□□□□□ -1.34
CD44-239ENST00000639002 TMC5Q6UXY8 1006 aa6.71□□□□□ -1.34
CD44-239ENST00000639002 TTLL11Q8NHH1 800 aa6.71□□□□□ -1.34
CD44-239ENST00000639002 ZNF669Q96BR6 464 aaPredicted RBP6.71□□□□□ -1.34
CD44-239ENST00000639002 YTHDC1Q96MU7 727 aaKnown RBP6.71□□□□□ -1.34
CD44-239ENST00000639002 ZFYVE21Q9BQ24 234 aa6.71□□□□□ -1.34
CD44-239ENST00000639002 SPATA9Q9BWV2 254 aa6.71□□□□□ -1.34
CD44-239ENST00000639002 PDGFDQ9GZP0 370 aaPredicted RBP6.71□□□□□ -1.34
CD44-239ENST00000639002 K7ESM1 405 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 KRIT1O00522 736 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 B4GALT3O60512 393 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 STK10O94804 968 aaKnown RBP6.7□□□□□ -1.34
CD44-239ENST00000639002 COL6A1P12109 1028 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 GRK2P25098 689 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 GRK3P35626 688 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 IFNL3Q8IZI9 196 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 LRRC47Q8N1G4 583 aaKnown RBP6.7□□□□□ -1.34
CD44-239ENST00000639002 UHMK1Q8TAS1 419 aaKnown RBP6.7□□□□□ -1.34
CD44-239ENST00000639002 KCNJ15Q99712 375 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 TRIM55Q9BYV6 548 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 TRAF6Q9Y4K3 522 aa6.7□□□□□ -1.34
CD44-239ENST00000639002 TCRBV5S4A2TA0A5A2 114 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 C9orf118A6NHY6 69 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 PDPK1O15530 556 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 PLATP00750 562 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 SOD2P04179 222 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 IFRD2Q12894 506 aaPredicted RBP6.69□□□□□ -1.34
CD44-239ENST00000639002 TUSC3Q13454 348 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 KIZQ2M2Z5 673 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 PHF19Q5T6S3 580 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 PRAMEF18Q5VWM3 479 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 TRIM48Q8IWZ4 208 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 LGI4Q8N135 537 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 LCORQ96JN0 433 aaPredicted RBP6.69□□□□□ -1.34
CD44-239ENST00000639002 CLIC6Q96NY7 704 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 TMEM209Q96SK2 561 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 IPPKQ9H8X2 491 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 CROTQ9UKG9 612 aa6.69□□□□□ -1.34
CD44-239ENST00000639002 MAFKO60675 156 aa6.68□□□□□ -1.34
CD44-239ENST00000639002 C6orf222P0C671 652 aaPredicted RBP6.68□□□□□ -1.34
CD44-239ENST00000639002 RASGRF1Q13972 1273 aa6.68□□□□□ -1.34
CD44-239ENST00000639002 CKAP2LQ8IYA6 745 aa6.68□□□□□ -1.34
CD44-239ENST00000639002 DTX3Q8N9I9 347 aa6.68□□□□□ -1.34
CD44-239ENST00000639002 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.68□□□□□ -1.34
CD44-239ENST00000639002 SH3RF2Q8TEC5 729 aa6.68□□□□□ -1.34
CD44-239ENST00000639002 KRTAP3-1Q9BYR8 98 aa6.68□□□□□ -1.34
CD44-239ENST00000639002 CCDC113Q9H0I3 377 aa6.68□□□□□ -1.34
CD44-239ENST00000639002 ACOT7O00154 380 aa6.67□□□□□ -1.34
CD44-239ENST00000639002 DIAPH1O60610 1272 aaKnown RBP6.67□□□□□ -1.34
CD44-239ENST00000639002 FAHP16930 419 aa6.67□□□□□ -1.34
CD44-239ENST00000639002 MAGEA10P43363 369 aaPredicted RBP6.67□□□□□ -1.34
CD44-239ENST00000639002 EPHA5P54756 1037 aa6.67□□□□□ -1.34
CD44-239ENST00000639002 PAN2Q504Q3 1202 aaKnown RBP6.67□□□□□ -1.34
CD44-239ENST00000639002 FAM209AQ5JX71 171 aa6.67□□□□□ -1.34
CD44-239ENST00000639002 PKN3Q6P5Z2 889 aa6.67□□□□□ -1.34
CD44-239ENST00000639002 DBX2Q6ZNG2 339 aa6.67□□□□□ -1.34
CD44-239ENST00000639002 PFDN2Q9UHV9 154 aa6.67□□□□□ -1.34
CD44-239ENST00000639002 CKMP06732 381 aa6.66□□□□□ -1.34
CD44-239ENST00000639002 GNAT1P11488 350 aa6.66□□□□□ -1.34
CD44-239ENST00000639002 ADAM17P78536 824 aa6.66□□□□□ -1.34
CD44-239ENST00000639002 SPIRE1Q08AE8 756 aa6.66□□□□□ -1.34
CD44-239ENST00000639002 LIMS2Q7Z4I7 341 aa6.66□□□□□ -1.34
CD44-239ENST00000639002 ZBTB38Q8NAP3 1195 aaPredicted RBP6.66□□□□□ -1.34
CD44-239ENST00000639002 TMEM168Q9H0V1 697 aa6.66□□□□□ -1.34
CD44-239ENST00000639002 L2HGDHQ9H9P8 463 aa6.66□□□□□ -1.34
CD44-239ENST00000639002 PPP4R1LQ9P1A2 415 aa6.66□□□□□ -1.34
CD44-239ENST00000639002 DSEQ9UL01 958 aa6.66□□□□□ -1.34
CD44-239ENST00000639002 FAM47E-STBD1D6RA91 191 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 KLHL18O94889 574 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 CYP1A1P04798 512 aaPredicted RBP6.65□□□□□ -1.34
CD44-239ENST00000639002 FAM153BP0C7A2 387 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 BORAQ6PGQ7 559 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 SCUBE1Q8IWY4 988 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 NUDT10Q8NFP7 164 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 NUDT11Q96G61 164 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 EXOC2Q96KP1 924 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 TANGO6Q9C0B7 1094 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 DLL4Q9NR61 685 aa6.65□□□□□ -1.34
CD44-239ENST00000639002 CCDC85CA6NKD9 419 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 ATP2B1P20020 1258 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 SSRP1Q08945 709 aaKnown RBP6.64□□□□□ -1.35
CD44-239ENST00000639002 SERINC3Q13530 473 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 MTERF2Q49AM1 385 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 CD276Q5ZPR3 534 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 VASNQ6EMK4 673 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 TRMT10BQ6PF06 316 aaKnown RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms