RNA–Protein interactions for RNA: ENST00000638755.1

PAX6-238, Transcript of paired box 6, human

TSL 5 BASIC

Gene PAX6, Length 1,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PAX6-238	ENST00000638755	DDX41	Q9UJV9	622 aa	Known RBP	13.8	□□□□□ -0.2
PAX6-238	ENST00000638755	DMXL1	Q9Y485	3027 aa		13.8	□□□□□ -0.2
PAX6-238	ENST00000638755	C17orf102	A2RUQ5	167 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	PATL2	C9JE40	543 aa	Known RBP	13.79	□□□□□ -0.2
PAX6-238	ENST00000638755		M0R2C6	588 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	GLP2R	O95838	553 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	PPARA	Q07869	468 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	LAMC2	Q13753	1193 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	STXBP2	Q15833	593 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	USH1G	Q495M9	461 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	MCTP2	Q6DN12	878 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	POTED	Q86YR6	584 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	APPBP2	Q92624	585 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	TAAR1	Q96RJ0	339 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	PLVAP	Q9BX97	442 aa		13.79	□□□□□ -0.2
PAX6-238	ENST00000638755	ZNF292	O60281	2723 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	TREH	O43280	583 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	ITGB1	P05556	798 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	RBM10	P98175	930 aa	Known RBP	13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	NSUN6	Q8TEA1	469 aa	Known RBP	13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	TBC1D5	Q92609	795 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	APBB2	Q92870	758 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	EMID1	Q96A84	441 aa	Predicted RBP	13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	CNTNAP3B	Q96NU0	1288 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	CNTNAP3	Q9BZ76	1288 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	NACAP1	Q9BZK3	213 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	PCDHGC5	Q9Y5F6	944 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	MRVI1	Q9Y6F6	885 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	MYH7B	A7E2Y1	1941 aa		13.78	□□□□□ -0.2
PAX6-238	ENST00000638755	PER2	O15055	1255 aa		13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	RNF113A	O15541	343 aa	Known RBP	13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	RANBP6	O60518	1105 aa	Known RBP	13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	ATF7	P17544	494 aa	Predicted RBP	13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	CTDSPL2	Q05D32	466 aa		13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	KIAA1217	Q5T5P2	1943 aa		13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	KREMEN2	Q8NCW0	462 aa		13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	SPPL3	Q8TCT6	385 aa		13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	SPATA33	Q96N06	139 aa		13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	NAPB	Q9H115	298 aa		13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	RC3H2	Q9HBD1	1191 aa	Known RBP	13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	PNMA2	Q9UL42	364 aa		13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	KMT2B	Q9UMN6	2715 aa	Predicted RBP	13.77	□□□□□ -0.21
PAX6-238	ENST00000638755	DNAH14	Q0VDD8	3507 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	RAB11FIP3	O75154	756 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	PPFIA4	O75335	1185 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	SMIM10L2A	P0DMW4	78 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	SMIM10L2B	P0DMW5	78 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	HSDL1	Q3SXM5	330 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	KLHL23	Q8NBE8	558 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	MICAL1	Q8TDZ2	1067 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	POF1B	Q8WVV4	589 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	SUSD6	Q92537	303 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	P2RX5	Q93086	422 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	RMDN3	Q96TC7	470 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	TLE6	Q9H808	572 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	TSHZ2	Q9NRE2	1034 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	COL20A1	Q9P218	1284 aa		13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	MRPL42	Q9Y6G3	142 aa	Known RBP	13.76	□□□□□ -0.21
PAX6-238	ENST00000638755	WDR19	Q8NEZ3	1342 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	PPFIA3	O75145	1194 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	CAND2	O75155	1236 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	EIF2AK2	P19525	551 aa	Known RBP	13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	ARHGEF16	Q5VV41	709 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	ASTL	Q6HA08	431 aa	Predicted RBP	13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	KIAA2013	Q8IYS2	634 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	KBTBD3	Q8NAB2	608 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	RGS22	Q8NE09	1264 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	KCNG4	Q8TDN1	519 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	ZNF689	Q96CS4	500 aa	Predicted RBP	13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	IWS1	Q96ST2	819 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	C16orf70	Q9BSU1	422 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	APOL5	Q9BWW9	433 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	MFSD1	Q9H3U5	465 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	RNPEP	Q9H4A4	650 aa		13.75	□□□□□ -0.21
PAX6-238	ENST00000638755	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
PAX6-238	ENST00000638755		H3BRB1	525 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	ENPP3	O14638	875 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	HMMR	O75330	724 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	EIF3J	O75822	258 aa	Known RBP	13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	BRD1	O95696	1058 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	GHR	P10912	638 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	HOXD8	P13378	290 aa	Predicted RBP	13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	MTMR3	Q13615	1198 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	MYSM1	Q5VVJ2	828 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	VN1R2	Q8NFZ6	395 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	NEK1	Q96PY6	1258 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	TMEM47	Q9BQJ4	181 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	SMOC2	Q9H3U7	446 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	TUT1	Q9H6E5	874 aa	Known RBP	13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	SETD4	Q9NVD3	440 aa		13.74	□□□□□ -0.21
PAX6-238	ENST00000638755	ACACB	O00763	2458 aa		13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	MYO10	Q9HD67	2058 aa		13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	DGKI	O75912	1065 aa		13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	GGPS1	O95749	300 aa		13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	NR3C2	P08235	984 aa		13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	HOXC8	P31273	242 aa		13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	PAN2	Q504Q3	1202 aa	Known RBP	13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	NAALADL2	Q58DX5	795 aa		13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms