RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	PCDHA8	Q9Y5H6	950 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	PMF1-BGLAP	U3KQ54	211 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	ARID1B	Q8NFD5	2236 aa	Predicted RBP	4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	CYP7B1	O75881	506 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	LRG1	P02750	347 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	C8B	P07358	591 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	GJA4	P35212	333 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	CRY1	Q16526	586 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	VWA3B	Q502W6	1294 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	HOMER1	Q86YM7	354 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	ARRDC4	Q8NCT1	418 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	DDX11	Q96FC9	970 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	WRNIP1	Q96S55	665 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	C11orf84	Q9BUA3	381 aa	Predicted RBP	4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	IRF2BPL	Q9H1B7	796 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	PIF1	Q9H611	641 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	TRIM39	Q9HCM9	518 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	LUC7L	Q9NQ29	371 aa	Known RBP	4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	PPARGC1A	Q9UBK2	798 aa	Known RBP	4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	PLA2G2D	Q9UNK4	145 aa		4.54	□□□□□ -1.68
CNOT1-223	ENST00000628857	TCRBV16S1A1N1	A0A5B0	115 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	CLASP2	O75122	1294 aa	Known RBP	4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	PLA2G1B	P04054	148 aa	Known RBP	4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	CHGB	P05060	677 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	CKM	P06732	381 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	FAH	P16930	419 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	ST5	P78524	1137 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	DLX2	Q07687	328 aa	Predicted RBP	4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	TCEA2	Q15560	299 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	TEPP	Q6URK8	271 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	HHIPL2	Q6UWX4	724 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	CD300LD	Q6UXZ3	194 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	LCNL1	Q6ZST4	164 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	KCTD1	Q719H9	257 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	CLEC4D	Q8WXI8	215 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	APPBP2	Q92624	585 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	SCLY	Q96I15	445 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	TMEM209	Q96SK2	561 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	YIPF4	Q9BSR8	244 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	PCDHA9	Q9Y5H5	950 aa		4.53	□□□□□ -1.68
CNOT1-223	ENST00000628857	FFAR3	O14843	346 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	NKRF	O15226	690 aa	Known RBP eCLIP	4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	ASL	P04424	464 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	KCNA6	P17658	529 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	MC3R	P41968	323 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	LIMS1	P48059	325 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	TUSC3	Q13454	348 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	ARHGAP44	Q17R89	818 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	FBLN7	Q53RD9	439 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	FIGN	Q5HY92	759 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	PRR31	Q5SQ13	230 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	SPOCD1	Q6ZMY3	1216 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	ARHGAP36	Q6ZRI8	547 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	TTLL7	Q6ZT98	887 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	C16orf86	Q6ZW13	317 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	KRTAP1-3	Q8IUG1	177 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	ZC3H7A	Q8IWR0	971 aa	Known RBP	4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	MARCH10	Q8NA82	808 aa	Predicted RBP	4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	SH3RF2	Q8TEC5	729 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	KCNJ15	Q99712	375 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	GORASP1	Q9BQQ3	440 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	ORAI3	Q9BRQ5	295 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	BCAS3	Q9H6U6	928 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	NDOR1	Q9UHB4	597 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	SRPK3	Q9UPE1	567 aa		4.52	□□□□□ -1.69
CNOT1-223	ENST00000628857	TCRBV5S4A2T	A0A5A2	114 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	BTBD11	A6QL63	1104 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	ZNF561-AS1	K7EIQ3	104 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	ENPP3	O14638	875 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	SLC27A2	O14975	620 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	SMARCA5	O60264	1052 aa	Predicted RBP	4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	ENO2	P09104	434 aa	Predicted RBP	4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	COL6A2	P12110	1019 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	PDE6A	P16499	860 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	RPL13	P26373	211 aa	Known RBP	4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	THBS2	P35442	1172 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	ITGA1	P56199	1179 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	HERVK_113	P62684	666 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	PAN2	Q504Q3	1202 aa	Known RBP	4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	LIPI	Q6XZB0	460 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	BRAP	Q7Z569	592 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	SP8	Q8IXZ3	490 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	TP53I13	Q8NBR0	393 aa	Predicted RBP	4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	NOX5	Q96PH1	765 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	KCNC2	Q96PR1	638 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	CATSPERZ	Q9NTU4	200 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	SPATA6	Q9NWH7	488 aa	Predicted RBP	4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	NTM	Q9P121	344 aa		4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.51	□□□□□ -1.69
CNOT1-223	ENST00000628857	CCDC66	A2RUB6	948 aa		4.5	□□□□□ -1.69
CNOT1-223	ENST00000628857	SASH1	O94885	1247 aa		4.5	□□□□□ -1.69
CNOT1-223	ENST00000628857	AMY2A	P04746	511 aa		4.5	□□□□□ -1.69
CNOT1-223	ENST00000628857	PYGM	P11217	842 aa		4.5	□□□□□ -1.69
CNOT1-223	ENST00000628857	AMY2B	P19961	511 aa		4.5	□□□□□ -1.69
CNOT1-223	ENST00000628857	POU3F2	P20265	443 aa	Predicted RBP	4.5	□□□□□ -1.69
CNOT1-223	ENST00000628857	IGFALS	P35858	605 aa		4.5	□□□□□ -1.69
CNOT1-223	ENST00000628857	FLT3	P36888	993 aa		4.5	□□□□□ -1.69
CNOT1-223	ENST00000628857	ADAM9	Q13443	819 aa		4.5	□□□□□ -1.69
CNOT1-223	ENST00000628857	FAM26F	Q5R3K3	315 aa		4.5	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms