RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 CNR2P34972 360 aa7.83□□□□□ -1.16
VPS29-212ENST00000621131 RGL3Q3MIN7 710 aa7.83□□□□□ -1.16
VPS29-212ENST00000621131 MCTP2Q6DN12 878 aa7.83□□□□□ -1.16
VPS29-212ENST00000621131 TXNDC5Q8NBS9 432 aaKnown RBP7.83□□□□□ -1.16
VPS29-212ENST00000621131 KRTAP4-11Q9BYQ6 195 aa7.83□□□□□ -1.16
VPS29-212ENST00000621131 SLC27A2O14975 620 aa7.82□□□□□ -1.16
VPS29-212ENST00000621131 ADCY3O60266 1144 aa7.82□□□□□ -1.16
VPS29-212ENST00000621131 GPR85P60893 370 aa7.82□□□□□ -1.16
VPS29-212ENST00000621131 KIAA2012Q0VF49 1180 aa7.82□□□□□ -1.16
VPS29-212ENST00000621131 IFRD2Q12894 506 aaPredicted RBP7.82□□□□□ -1.16
VPS29-212ENST00000621131 RASGRF1Q13972 1273 aa7.82□□□□□ -1.16
VPS29-212ENST00000621131 HABP4Q5JVS0 413 aaKnown RBP7.82□□□□□ -1.16
VPS29-212ENST00000621131 ASXL2Q76L83 1435 aa7.82□□□□□ -1.16
VPS29-212ENST00000621131 TRIM48Q8IWZ4 208 aa7.82□□□□□ -1.16
VPS29-212ENST00000621131 IFNL3Q8IZI9 196 aa7.82□□□□□ -1.16
VPS29-212ENST00000621131 TANGO6Q9C0B7 1094 aa7.82□□□□□ -1.16
VPS29-212ENST00000621131 PDGFDQ9GZP0 370 aaPredicted RBP7.82□□□□□ -1.16
VPS29-212ENST00000621131 COL6A2P12110 1019 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 ZNF28P17035 718 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 ATP2B1P20020 1258 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 GRK2P25098 689 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 IL13P35225 146 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 GRK3P35626 688 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 KRTAP10-2P60368 255 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 NFKB2Q00653 900 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 EFEMP1Q12805 493 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 KIZQ2M2Z5 673 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 PRRT2Q7Z6L0 340 aaPredicted RBP7.81□□□□□ -1.16
VPS29-212ENST00000621131 PROSER1Q86XN7 944 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 RBM12BQ8IXT5 1001 aaKnown RBP7.81□□□□□ -1.16
VPS29-212ENST00000621131 TTLL11Q8NHH1 800 aa7.81□□□□□ -1.16
VPS29-212ENST00000621131 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.81□□□□□ -1.164e-11■■■■□ 26.4
VPS29-212ENST00000621131 MROH6A6NGR9 719 aa7.8□□□□□ -1.16
VPS29-212ENST00000621131 U2SURPO15042 1029 aaKnown RBP7.8□□□□□ -1.16
VPS29-212ENST00000621131 MLLT6P55198 1093 aaPredicted RBP7.8□□□□□ -1.16
VPS29-212ENST00000621131 NBPF6Q5VWK0 638 aa7.8□□□□□ -1.16
VPS29-212ENST00000621131 SCUBE1Q8IWY4 988 aa7.8□□□□□ -1.16
VPS29-212ENST00000621131 NBPF4Q96M43 638 aa7.8□□□□□ -1.16
VPS29-212ENST00000621131 C8orf37Q96NL8 207 aa7.8□□□□□ -1.16
VPS29-212ENST00000621131 RBM15Q96T37 977 aaKnown RBP eCLIP7.8□□□□□ -1.16
VPS29-212ENST00000621131 KCNJ15Q99712 375 aa7.8□□□□□ -1.16
VPS29-212ENST00000621131 CNOT11Q9UKZ1 510 aaKnown RBP7.8□□□□□ -1.16
VPS29-212ENST00000621131 NKRFO15226 690 aaKnown RBP eCLIP7.79□□□□□ -1.16
VPS29-212ENST00000621131 SOD2P04179 222 aa7.79□□□□□ -1.16
VPS29-212ENST00000621131 GRIN1Q05586 938 aa7.79□□□□□ -1.16
VPS29-212ENST00000621131 FOXB2Q5VYV0 432 aa7.79□□□□□ -1.16
VPS29-212ENST00000621131 ZBTB38Q8NAP3 1195 aaPredicted RBP7.79□□□□□ -1.16
VPS29-212ENST00000621131 UHMK1Q8TAS1 419 aaKnown RBP7.79□□□□□ -1.16
VPS29-212ENST00000621131 ZSWIM3Q96MP5 696 aa7.79□□□□□ -1.16
VPS29-212ENST00000621131 CLIC6Q96NY7 704 aa7.79□□□□□ -1.16
VPS29-212ENST00000621131 TMEM209Q96SK2 561 aa7.79□□□□□ -1.16
VPS29-212ENST00000621131 SIRPGQ9P1W8 387 aa7.79□□□□□ -1.16
VPS29-212ENST00000621131 RBPJLQ9UBG7 517 aa7.79□□□□□ -1.16
VPS29-212ENST00000621131 ITGB3P05106 788 aa7.78□□□□□ -1.16
VPS29-212ENST00000621131 RBL2Q08999 1139 aa7.78□□□□□ -1.16
VPS29-212ENST00000621131 SPIRE1Q08AE8 756 aa7.78□□□□□ -1.16
VPS29-212ENST00000621131 TUSC3Q13454 348 aa7.78□□□□□ -1.16
VPS29-212ENST00000621131 YTHDC1Q96MU7 727 aaKnown RBP7.78□□□□□ -1.16
VPS29-212ENST00000621131 IPPKQ9H8X2 491 aa7.78□□□□□ -1.16
VPS29-212ENST00000621131 PPP1R1BQ9UD71 204 aaPredicted RBP7.78□□□□□ -1.16
VPS29-212ENST00000621131 PFDN2Q9UHV9 154 aa7.78□□□□□ -1.16
VPS29-212ENST00000621131 INVSQ9Y283 1065 aa7.78□□□□□ -1.16
VPS29-212ENST00000621131 TRAF6Q9Y4K3 522 aa7.78□□□□□ -1.16
VPS29-212ENST00000621131 TELO2Q9Y4R8 837 aa7.78□□□□□ -1.16
VPS29-212ENST00000621131 C9orf118A6NHY6 69 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 DIAPH1O60610 1272 aaKnown RBP7.77□□□□□ -1.17
VPS29-212ENST00000621131 LTFP02788 710 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 GNAT1P11488 350 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 EPHA5P54756 1037 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 SPATS1Q496A3 300 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 MTERF2Q49AM1 385 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 TBC1D10BQ4KMP7 808 aaPredicted RBP7.77□□□□□ -1.17
VPS29-212ENST00000621131 PRAMEF18Q5VWM3 479 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 TMC5Q6UXY8 1006 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 DPH6Q7L8W6 267 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 LGI4Q8N135 537 aa7.77□□□□□ -1.17
VPS29-212ENST00000621131 LCORQ96JN0 433 aaPredicted RBP7.77□□□□□ -1.17
VPS29-212ENST00000621131 TRBV23-1A0A0A0MS06 115 aa7.76□□□□□ -1.17
VPS29-212ENST00000621131 FAM47E-STBD1D6RA91 191 aa7.76□□□□□ -1.17
VPS29-212ENST00000621131 CYP7B1O75881 506 aa7.76□□□□□ -1.17
VPS29-212ENST00000621131 FAHP16930 419 aa7.76□□□□□ -1.17
VPS29-212ENST00000621131 SERINC3Q13530 473 aa7.76□□□□□ -1.17
VPS29-212ENST00000621131 PAN2Q504Q3 1202 aaKnown RBP7.76□□□□□ -1.17
VPS29-212ENST00000621131 FAM209AQ5JX71 171 aa7.76□□□□□ -1.17
VPS29-212ENST00000621131 ZCCHC14Q8WYQ9 949 aaKnown RBP7.76□□□□□ -1.17
VPS29-212ENST00000621131 MBD6Q96DN6 1003 aa7.76□□□□□ -1.17
VPS29-212ENST00000621131 CROTQ9UKG9 612 aa7.76□□□□□ -1.17
VPS29-212ENST00000621131 DSEQ9UL01 958 aa7.76□□□□□ -1.17
VPS29-212ENST00000621131 TCRBV5S4A2TA0A5A2 114 aa7.75□□□□□ -1.17
VPS29-212ENST00000621131 CCDC85CA6NKD9 419 aa7.75□□□□□ -1.17
VPS29-212ENST00000621131 K7ESM1 405 aa7.75□□□□□ -1.17
VPS29-212ENST00000621131 PLATP00750 562 aa7.75□□□□□ -1.17
VPS29-212ENST00000621131 ADRB1P08588 477 aa7.75□□□□□ -1.17
VPS29-212ENST00000621131 C6orf222P0C671 652 aaPredicted RBP7.75□□□□□ -1.17
VPS29-212ENST00000621131 FAM153BP0C7A2 387 aa7.75□□□□□ -1.17
VPS29-212ENST00000621131 COL6A1P12109 1028 aa7.75□□□□□ -1.17
VPS29-212ENST00000621131 GTF2F1P35269 517 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS29-212ENST00000621131 SSRP1Q08945 709 aaKnown RBP7.75□□□□□ -1.17
VPS29-212ENST00000621131 HHIPL2Q6UWX4 724 aa7.75□□□□□ -1.17
VPS29-212ENST00000621131 FAM124AQ86V42 546 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms