RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 LLGL2Q6P1M3 1020 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 COPS6Q7L5N1 327 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 PTF1AQ7RTS3 328 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 MB21D1Q8N884 522 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 EAF2Q96CJ1 260 aaPredicted RBP5.45□□□□□ -1.54
VPS13D-214ENST00000620676 GOLPH3Q9H4A6 298 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 UBN1Q9NPG3 1134 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 CC2D2AQ9P2K1 1620 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 PGRMC1O00264 195 aaKnown RBP5.45□□□□□ -1.54
VPS13D-214ENST00000620676 KCNQ3O43525 872 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 UBOX5O94941 541 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 MAN1A1P33908 653 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 NR5A1Q13285 461 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 TRPC3Q13507 836 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 CUL4BQ13620 913 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 C1orf228Q6PIY5 440 aa5.45□□□□□ -1.54
VPS13D-214ENST00000620676 LAMC3Q9Y6N6 1575 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 PDE5AO76074 875 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 RESP18Q5W5W9 173 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 STX8Q9UNK0 236 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 RASA4BC9J798 803 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 RASA4O43374 803 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 CDR2Q01850 454 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 ESCO1Q5FWF5 840 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 OGFOD1Q8N543 542 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 SYT2Q8N9I0 419 aaPredicted RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 HPS3Q969F9 1004 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 KRT23Q9C075 422 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TXNDC16Q9P2K2 825 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 PNMA3Q9UL41 463 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 THRAP3Q9Y2W1 955 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 CAPN1P07384 714 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 OVGP1Q12889 678 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 THOC5Q13769 683 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TNNI3KQ59H18 835 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 MARCOQ9UEW3 520 aaPredicted RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 FPGT-TNNI3KV9GXZ4 949 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 ATAD2BQ9ULI0 1458 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 ADCY9O60503 1353 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 SLC5A1P13866 664 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 LONP1P36776 959 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 YWHAGP61981 247 aaKnown RBP eCLIP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 STAG2Q8N3U4 1231 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 OXER1Q8TDS5 423 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 FERMT1Q9BQL6 677 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TTC26A0AVF1 554 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 GJA8P48165 433 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 SH3BGRP55822 239 aaPredicted RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 CNBD1Q8NA66 436 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TTC8Q8TAM2 541 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 FMO2Q99518 471 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 EPB41P11171 864 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 SP4Q02446 784 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 CYLC2Q14093 348 aaPredicted RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 NSMFQ6X4W1 530 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 SYCE1Q8N0S2 351 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TSC22D2O75157 780 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TAF5LO75529 589 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 DLGAP3O95886 979 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 KIFC2Q96AC6 838 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 EXOC1LA0A1B0GW35 172 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 PRAMEP78395 509 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 EIF4A2Q14240 407 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 RNF220Q5VTB9 566 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 DNAAF5Q86Y56 855 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TAF6LQ9Y6J9 622 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 CAMSAP2Q08AD1 1489 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 LMNAP02545 664 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 RIC8AQ9NPQ8 531 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 RWDD2AQ9UIY3 292 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TARSL2A2RTX5 802 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 RNASELQ05823 741 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 PRR23CQ6ZRP0 262 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 AGR3Q8TD06 166 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 DPPA5A6NC42 116 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 DYNLT1P63172 113 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 VWA3BQ502W6 1294 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 PPP4R1Q8TF05 950 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 USP15Q9Y4E8 981 aaPredicted RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 CARMIL3Q8ND23 1372 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 RPS6KA3P51812 740 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 KIF11P52732 1056 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 COPS2P61201 443 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TTMPQ5BVD1 217 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 NAF1Q96HR8 494 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 TRMT112Q9UI30 125 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 CAPN11Q9UMQ6 739 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 F8W031 263 aaPredicted RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 AP2B1P63010 937 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 CUL1Q13616 776 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 NCAPHQ15003 741 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 GEN1Q17RS7 908 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 KRT80Q6KB66 452 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 ANKMY2Q8IV38 441 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 CNGB3Q9NQW8 809 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 SMYD2Q9NRG4 433 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 DBNLQ9UJU6 430 aaKnown RBP5.44□□□□□ -1.54
VPS13D-214ENST00000620676 PCDHB13Q9Y5F0 798 aa5.44□□□□□ -1.54
VPS13D-214ENST00000620676 ZNF521Q96K83 1311 aa5.43□□□□□ -1.54
VPS13D-214ENST00000620676 LRRN2O75325 713 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms