RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 DNA2P51530 1060 aa17.42■□□□□ 0.38
CPSF1-213ENST00000620219 CNOT6LQ96LI5 555 aaKnown RBP17.42■□□□□ 0.38
CPSF1-213ENST00000620219 ACAD9Q9H845 621 aa17.42■□□□□ 0.38
CPSF1-213ENST00000620219 DNAI1Q9UI46 699 aa17.42■□□□□ 0.38
CPSF1-213ENST00000620219 CCND2P30279 289 aa17.42■□□□□ 0.38
CPSF1-213ENST00000620219 ZNF280AP59817 542 aaPredicted RBP17.42■□□□□ 0.38
CPSF1-213ENST00000620219 GRB10Q13322 594 aa17.42■□□□□ 0.38
CPSF1-213ENST00000620219 MUM1L1Q5H9M0 696 aa17.42■□□□□ 0.38
CPSF1-213ENST00000620219 SYT10Q6XYQ8 523 aa17.42■□□□□ 0.38
CPSF1-213ENST00000620219 COPB1P53618 953 aaKnown RBP17.42■□□□□ 0.38
CPSF1-213ENST00000620219 MDM2Q00987 491 aaPredicted RBP17.42■□□□□ 0.38
CPSF1-213ENST00000620219 CLMNQ96JQ2 1002 aa17.42■□□□□ 0.38
CPSF1-213ENST00000620219 SPAG5Q96R06 1193 aa17.42■□□□□ 0.38
CPSF1-213ENST00000620219 CCP110O43303 1012 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 ZSCAN12O43309 604 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 TBC1D12O60347 775 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 NSUN6Q8TEA1 469 aaKnown RBP17.41■□□□□ 0.38
CPSF1-213ENST00000620219 COL4A3BPQ9Y5P4 624 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 URI1O94763 535 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-213ENST00000620219 PRELPP51888 382 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 ARMCX5Q6P1M9 558 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 ANKRD13AQ8IZ07 590 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 TUBGCP2Q9BSJ2 902 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 NLRC4Q9NPP4 1024 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 ADAM9Q13443 819 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 MTMR14Q8NCE2 650 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 NACC1Q96RE7 527 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 LXNQ9BS40 222 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 EMILIN3Q9NT22 766 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 RWDD2AQ9UIY3 292 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.41■□□□□ 0.38
CPSF1-213ENST00000620219 AKR1B10O60218 316 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 OSBPP22059 807 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 GNG11P61952 73 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 UNC13DQ70J99 1090 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 SFR1Q86XK3 245 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 BPIFA3Q9BQP9 254 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 SUGCTQ9HAC7 445 aa17.41■□□□□ 0.38
CPSF1-213ENST00000620219 KRT31Q15323 416 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 PDXDC2PQ6P474 469 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 CATSPER3Q86XQ3 398 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 RBM46Q8TBY0 533 aaKnown RBP17.4■□□□□ 0.38
CPSF1-213ENST00000620219 KCNH7Q9NS40 1196 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 SEPT9Q9UHD8 586 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-213ENST00000620219 K7ENM7 598 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 MED24O75448 989 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 NR3C2P08235 984 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 CCNE1P24864 410 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 SREBF1P36956 1147 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 ATRNL1Q5VV63 1379 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 PLIN4Q96Q06 1357 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 CDC25BP30305 580 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 FXR2P51116 673 aaKnown RBP eCLIP17.4■□□□□ 0.389e-7■■■■□ 19.6
CPSF1-213ENST00000620219 COASYQ13057 564 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 KIF18AQ8NI77 898 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 FAM212AQ96EL1 285 aa17.4■□□□□ 0.38
CPSF1-213ENST00000620219 COL24A1Q17RW2 1714 aa17.39■□□□□ 0.38
CPSF1-213ENST00000620219 EXOC3O60645 756 aa17.39■□□□□ 0.38
CPSF1-213ENST00000620219 PPP1R2P41236 205 aa17.39■□□□□ 0.38
CPSF1-213ENST00000620219 ORC2Q13416 577 aaPredicted RBP17.39■□□□□ 0.38
CPSF1-213ENST00000620219 SPA17Q15506 151 aa17.39■□□□□ 0.38
CPSF1-213ENST00000620219 NEK11Q8NG66 645 aa17.39■□□□□ 0.38
CPSF1-213ENST00000620219 IMPACTQ9P2X3 320 aa17.39■□□□□ 0.38
CPSF1-213ENST00000620219 PNMA2Q9UL42 364 aa17.39■□□□□ 0.38
CPSF1-213ENST00000620219 IRF6O14896 467 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 RPL13P26373 211 aaKnown RBP17.39■□□□□ 0.37
CPSF1-213ENST00000620219 MARK3P27448 753 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 KCNK18Q7Z418 384 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 C2orf69Q8N8R5 385 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 CEP170P1Q96L14 293 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 PDCL3Q9H2J4 239 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 AZI2Q9H6S1 392 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 A0A1B0GUL6 1792 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 VWA5AO00534 786 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 RIOK3O14730 519 aaKnown RBP17.39■□□□□ 0.37
CPSF1-213ENST00000620219 CASP14P31944 242 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 HIRAP54198 1017 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-213ENST00000620219 RAPGEF1Q13905 1077 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 DPP9Q86TI2 863 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 VSTM4Q8IW00 320 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 KLRG1Q96E93 195 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 DHTKD1Q96HY7 919 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-213ENST00000620219 MYH1P12882 1939 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 NR2F2P24468 414 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 SETQ01105 290 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-213ENST00000620219 CDCA5Q96FF9 252 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 MTRQ99707 1265 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 STK24Q9Y6E0 443 aa17.39■□□□□ 0.37
CPSF1-213ENST00000620219 MYL1P05976 194 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 KRT13P13646 458 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 PSMC6P62333 389 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 SYCP1Q15431 976 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 MTERF2Q49AM1 385 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 HAS1Q92839 578 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 ZSWIM4Q9H7M6 989 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 C4orf32Q8N8J7 132 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 GTPBP4Q9BZE4 634 aaKnown RBP17.38■□□□□ 0.37
CPSF1-213ENST00000620219 LARSQ9P2J5 1176 aaKnown RBP17.38■□□□□ 0.37
CPSF1-213ENST00000620219 TIAM2Q8IVF5 1701 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 YBX3P16989 372 aaKnown RBP eCLIP17.38■□□□□ 0.377e-7■□□□□ 11
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms