RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 OXER1Q8TDS5 423 aa11.4□□□□□ -0.58
UPF1-213ENST00000601981 FTOQ9C0B1 505 aaKnown RBP eCLIP11.4□□□□□ -0.58
UPF1-213ENST00000601981 JADE2Q9NQC1 790 aa11.4□□□□□ -0.58
UPF1-213ENST00000601981 PDGFCQ9NRA1 345 aa11.4□□□□□ -0.58
UPF1-213ENST00000601981 DDX19AQ9NUU7 478 aaKnown RBP11.4□□□□□ -0.58
UPF1-213ENST00000601981 UBIAD1Q9Y5Z9 338 aa11.4□□□□□ -0.58
UPF1-213ENST00000601981 MYH9P35579 1960 aaKnown RBP11.39□□□□□ -0.59
UPF1-213ENST00000601981 A0A1W2PQ27 194 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 A0A1W2PQ64 194 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 A0A1W2PQD8 194 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 SPATA31C2B4DYI2 1134 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 SPTLC2O15270 562 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 MYCNP04198 464 aaPredicted RBP11.39□□□□□ -0.59
UPF1-213ENST00000601981 C6orf222P0C671 652 aaPredicted RBP11.39□□□□□ -0.59
UPF1-213ENST00000601981 SMPD1P17405 629 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 CPT1AP50416 773 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 CEBPZQ03701 1054 aaKnown RBP11.39□□□□□ -0.59
UPF1-213ENST00000601981 LAMC2Q13753 1193 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 LETM2Q2VYF4 491 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 RILPL1Q5EBL4 403 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 LRSAM1Q6UWE0 723 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 DHX37Q8IY37 1157 aaKnown RBP11.39□□□□□ -0.59
UPF1-213ENST00000601981 PCSK9Q8NBP7 692 aaKnown RBP11.39□□□□□ -0.59
UPF1-213ENST00000601981 CRYGNQ8WXF5 182 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 KAT6AQ92794 2004 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 SENP7Q9BQF6 1050 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 SDF4Q9BRK5 362 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 MLXIPQ9HAP2 919 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 DDX41Q9UJV9 622 aaKnown RBP11.39□□□□□ -0.59
UPF1-213ENST00000601981 OGDHLQ9ULD0 1010 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 GNEQ9Y223 722 aaKnown RBP11.39□□□□□ -0.59
UPF1-213ENST00000601981 CLIC4Q9Y696 253 aa11.39□□□□□ -0.59
UPF1-213ENST00000601981 MORC2Q9Y6X9 1032 aaPredicted RBP11.39□□□□□ -0.59
UPF1-213ENST00000601981 SYNRGQ9UMZ2 1314 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 MEIS1O00470 390 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 NOP56O00567 594 aaKnown RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 DYNC1LI2O43237 492 aaPredicted RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 MARCH6O60337 910 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 CCNT1O60563 726 aaKnown RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 PPP6R2O75170 966 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 RGS20O76081 388 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 GGPS1O95749 300 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 ITGB5P18084 799 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 LIG1P18858 919 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 UBA1P22314 1058 aaKnown RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 ME1P48163 572 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 TRAPPC10P48553 1259 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 MRE11P49959 708 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 GJA9P57773 515 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 ORC2Q13416 577 aaPredicted RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 SLC39A14Q15043 492 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 SF3A1Q15459 793 aaKnown RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 LY6KQ17RY6 165 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 PRR16Q569H4 304 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 LHX8Q68G74 356 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 PPP4R3AQ6IN85 833 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 CCDC62Q6P9F0 684 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 TNFRSF25Q93038 417 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 ZFP91Q96JP5 570 aaPredicted RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 CRISPLD2Q9H0B8 497 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 UPF3AQ9H1J1 476 aaKnown RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 KCNH7Q9NS40 1196 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 DDX25Q9UHL0 483 aaKnown RBP11.38□□□□□ -0.59
UPF1-213ENST00000601981 WDR81Q562E7 1941 aa11.38□□□□□ -0.59
UPF1-213ENST00000601981 PDE4DIPQ5VU43 2346 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 SYCE3A1L190 88 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 FAM86B1E9PN63 330 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 DNM1LO00429 736 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 ADAMTS3O15072 1205 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 KPNA6O60684 536 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 FAM86B2P0C5J1 330 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 CST5P28325 142 aaPredicted RBP11.37□□□□□ -0.59
UPF1-213ENST00000601981 PTPAQ15257 358 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 FSCN1Q16658 493 aaKnown RBP11.37□□□□□ -0.59
UPF1-213ENST00000601981 Q4G0T1 1027 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 GNASQ5JWF2 1037 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 CELF3Q5SZQ8 465 aaKnown RBP11.37□□□□□ -0.59
UPF1-213ENST00000601981 ADALQ6DHV7 355 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 METTL7BQ6UX53 244 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 CCDC73Q6ZRK6 1079 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 GAS2L3Q86XJ1 694 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 EMID1Q96A84 441 aaPredicted RBP11.37□□□□□ -0.59
UPF1-213ENST00000601981 LENG1Q96BZ8 264 aaPredicted RBP11.37□□□□□ -0.59
UPF1-213ENST00000601981 ZNF577Q9BSK1 485 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 TSEN34Q9BSV6 310 aaKnown RBP11.37□□□□□ -0.59
UPF1-213ENST00000601981 TBC1D22BQ9NU19 505 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 PCDHA7Q9UN72 937 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 CEP131Q9UPN4 1083 aa11.37□□□□□ -0.59
UPF1-213ENST00000601981 NFASCO94856 1347 aa11.36□□□□□ -0.59
UPF1-213ENST00000601981 IGLV3-22A0A075B6J6 115 aa11.36□□□□□ -0.59
UPF1-213ENST00000601981 CYP3A7-CYP3A51PA0A087WV96 503 aa11.36□□□□□ -0.59
UPF1-213ENST00000601981 MOXD2PA6NHM9 499 aa11.36□□□□□ -0.59
UPF1-213ENST00000601981 IPO5O00410 1097 aaKnown RBP11.36□□□□□ -0.59
UPF1-213ENST00000601981 TBX3O15119 743 aa11.36□□□□□ -0.59
UPF1-213ENST00000601981 ADAMTS4O75173 837 aa11.36□□□□□ -0.59
UPF1-213ENST00000601981 CABYRO75952 493 aa11.36□□□□□ -0.59
UPF1-213ENST00000601981 FARP2O94887 1054 aaPredicted RBP11.36□□□□□ -0.59
UPF1-213ENST00000601981 ARIH2O95376 493 aa11.36□□□□□ -0.59
UPF1-213ENST00000601981 TDP2O95551 362 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms