RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CCDC82Q8N4S0 544 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 GIMAP8Q8ND71 665 aaPredicted RBP11.27□□□□□ -0.61
VRK3-216ENST00000599342 ATP6V0A1Q93050 837 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 CDHR1Q96JP9 859 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 PSTPIP2Q9H939 334 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 EMSYQ7Z589 1322 aa11.27□□□□□ -0.61
VRK3-216ENST00000599342 BAZ2BQ9UIF8 2168 aaKnown RBP11.26□□□□□ -0.61
VRK3-216ENST00000599342 GNAT1P11488 350 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 SEMA3FQ13275 785 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 IKBKEQ14164 716 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 GPNMBQ14956 572 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 TRIM71Q2Q1W2 868 aaKnown RBP11.26□□□□□ -0.61
VRK3-216ENST00000599342 TMTC3Q6ZXV5 915 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 HEATR3Q7Z4Q2 680 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 SERINC5Q86VE9 423 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 SGMS1Q86VZ5 419 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 FANCBQ8NB91 859 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 IL27Q8NEV9 243 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 ATXN2LQ8WWM7 1075 aaKnown RBP11.26□□□□□ -0.61
VRK3-216ENST00000599342 ARNTL2Q8WYA1 636 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 WNT8BQ93098 351 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 NEK1Q96PY6 1258 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 GPR20Q99678 358 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 SENP7Q9BQF6 1050 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 EHMT1Q9H9B1 1298 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 CERS4Q9HA82 394 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 PRDM6Q9NQX0 595 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 RBM28Q9NW13 759 aaKnown RBP11.26□□□□□ -0.61
VRK3-216ENST00000599342 MYH7BA7E2Y1 1941 aa11.26□□□□□ -0.61
VRK3-216ENST00000599342 hCG_1642624A0A1W2PR95 340 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 RSPH10B2B2RC85 870 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 CDC45O75419 566 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 LGR5O75473 907 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 RSPH10BP0C881 870 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 DEFB103AP81534 67 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 TAP1Q03518 808 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 COL9A3Q14050 684 aaPredicted RBP11.25□□□□□ -0.61
VRK3-216ENST00000599342 HIC1Q14526 733 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 SKIV2LQ15477 1246 aaKnown RBP11.25□□□□□ -0.61
VRK3-216ENST00000599342 UBE2SQ16763 222 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 UTP14CQ5TAP6 766 aaKnown RBP11.25□□□□□ -0.61
VRK3-216ENST00000599342 APOA5Q6Q788 366 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 TRIM50Q86XT4 487 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 GPRASP2Q96D09 838 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 BCAS3Q9H6U6 928 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 PRUNE2Q8WUY3 3088 aa11.25□□□□□ -0.61
VRK3-216ENST00000599342 TRIP12Q14669 1992 aaPredicted RBP11.25□□□□□ -0.61
VRK3-216ENST00000599342 A0A0C4DFX4 3053 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 TREHO43280 583 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 ZBTB43O43298 467 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 CAND2O75155 1236 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 CTSHP09668 335 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 HOXC8P31273 242 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 TCF7P36402 384 aaPredicted RBP11.24□□□□□ -0.61
VRK3-216ENST00000599342 NAPAP54920 295 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 MRPS5P82675 430 aaKnown RBP11.24□□□□□ -0.61
VRK3-216ENST00000599342 FGD1P98174 961 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 MTMR1Q13613 665 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 KRT32Q14532 448 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 RTN1Q16799 776 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 TRAF7Q6Q0C0 670 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 DHX32Q7L7V1 743 aaKnown RBP11.24□□□□□ -0.61
VRK3-216ENST00000599342 TMCO2Q7Z6W1 182 aaPredicted RBP11.24□□□□□ -0.61
VRK3-216ENST00000599342 SKAP1Q86WV1 359 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 ASB2Q96Q27 587 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 RNPEPQ9H4A4 650 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 PCDHA6Q9UN73 950 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 PCDHA8Q9Y5H6 950 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 CNTNAP5Q8WYK1 1306 aa11.24□□□□□ -0.61
VRK3-216ENST00000599342 LCHNA4D1U4 455 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 RFXAPO00287 272 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 ARHGEF15O94989 841 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 GJB5O95377 273 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 AMHP03971 560 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 HMGB1P09429 215 aaKnown RBP11.23□□□□□ -0.61
VRK3-216ENST00000599342 ARHGAP4P98171 946 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 MBTPS1Q14703 1052 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 MYOCDQ8IZQ8 938 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 DBF4BQ8NFT6 615 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 TCEANC2Q96MN5 208 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 RAD9AQ99638 391 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 SETD4Q9NVD3 440 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 PKD2L1Q9P0L9 805 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 NAP1L2Q9ULW6 460 aaPredicted RBP11.23□□□□□ -0.61
VRK3-216ENST00000599342 MTCH2Q9Y6C9 303 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 NRCAMQ92823 1304 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 TET1Q8NFU7 2136 aa11.23□□□□□ -0.61
VRK3-216ENST00000599342 KLF18A0A0U1RQI7 1052 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 EPOPA6NHQ4 379 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 GOLGA8AA7E2F4 631 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 GOLGA8BA8MQT2 603 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 hCG_1984214I3L0E3 225 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 MAFGO15525 162 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 KCNA2P16389 499 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 ITGB5P18084 799 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 POU3F3P20264 500 aaPredicted RBP11.22□□□□□ -0.61
VRK3-216ENST00000599342 AAK1Q2M2I8 961 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 TCTN1Q2MV58 587 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 TSGA10IPQ3SY00 556 aa11.22□□□□□ -0.61
VRK3-216ENST00000599342 PLEKHG4Q58EX7 1191 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms