RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 GNAT1P11488 350 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 CSF2RAP15509 400 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 CCL23P55773 120 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 SP2Q02086 613 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 HSDL1Q3SXM5 330 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 SESTD1Q86VW0 696 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 REXO1Q8N1G1 1221 aaKnown RBP16.15■□□□□ 0.18
LIG1-218ENST00000599322 TNPO1Q92973 898 aaKnown RBP16.15■□□□□ 0.18
LIG1-218ENST00000599322 PHKBQ93100 1093 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 SDF4Q9BRK5 362 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 ANO3Q9BYT9 981 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 SLKQ9H2G2 1235 aaPredicted RBP16.15■□□□□ 0.18
LIG1-218ENST00000599322 IL23AQ9NPF7 189 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 JADE2Q9NQC1 790 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 TCEAL9Q9UHQ7 104 aa16.15■□□□□ 0.18
LIG1-218ENST00000599322 NID2Q14112 1375 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 H3BRB1 525 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 F2P00734 622 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 PFKMP08237 780 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 ZNF286BP0CG31 522 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 CYP2C9P11712 490 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 ACTN1P12814 892 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 XBP1P17861 261 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 RFC2P35250 354 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 NLRP5P59047 1200 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 SP4Q02446 784 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 STK3Q13188 491 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 CAGE1Q8TC20 777 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 MXRA8Q9BRK3 442 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 TUT1Q9H6E5 874 aaKnown RBP16.14■□□□□ 0.17
LIG1-218ENST00000599322 UBIAD1Q9Y5Z9 338 aa16.14■□□□□ 0.17
LIG1-218ENST00000599322 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.13■□□□□ 0.17
LIG1-218ENST00000599322 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.13■□□□□ 0.17
LIG1-218ENST00000599322 PITPNM1O00562 1244 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 DEXIO95424 95 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 PARNO95453 639 aaKnown RBP16.13■□□□□ 0.17
LIG1-218ENST00000599322 SMAD3P84022 425 aaKnown RBP16.13■□□□□ 0.17
LIG1-218ENST00000599322 TOB2Q14106 344 aaPredicted RBP16.13■□□□□ 0.17
LIG1-218ENST00000599322 UTP14CQ5TAP6 766 aaKnown RBP16.13■□□□□ 0.17
LIG1-218ENST00000599322 JAKMIP3Q5VZ66 844 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 SEPT1Q8WYJ6 367 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 KAT2BQ92831 832 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 CDX2Q99626 313 aaPredicted RBP16.13■□□□□ 0.17
LIG1-218ENST00000599322 C22orf23Q9BZE7 217 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 ZMYND12Q9H0C1 365 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 TTYH1Q9H313 450 aaPredicted RBP16.13■□□□□ 0.17
LIG1-218ENST00000599322 SEMA6BQ9H3T3 888 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 NCOA5Q9HCD5 579 aaKnown RBP16.13■□□□□ 0.17
LIG1-218ENST00000599322 SH3GLB2Q9NR46 395 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 HDAC6Q9UBN7 1215 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 GTF2IRD1Q9UHL9 959 aa16.13■□□□□ 0.17
LIG1-218ENST00000599322 C17orf102A2RUQ5 167 aa16.12■□□□□ 0.17
LIG1-218ENST00000599322 LGALS2P05162 132 aa16.12■□□□□ 0.17
LIG1-218ENST00000599322 ACRP10323 421 aa16.12■□□□□ 0.17
LIG1-218ENST00000599322 HOXD8P13378 290 aaPredicted RBP16.12■□□□□ 0.17
LIG1-218ENST00000599322 CEP55Q53EZ4 464 aa16.12■□□□□ 0.17
LIG1-218ENST00000599322 ZNF365Q70YC5 407 aa16.12■□□□□ 0.17
LIG1-218ENST00000599322 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.12■□□□□ 0.17
LIG1-218ENST00000599322 FAM177A1Q8N128 213 aaPredicted RBP16.12■□□□□ 0.17
LIG1-218ENST00000599322 GPR20Q99678 358 aa16.12■□□□□ 0.17
LIG1-218ENST00000599322 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.12■□□□□ 0.17
LIG1-218ENST00000599322 FTOQ9C0B1 505 aaKnown RBP eCLIP16.12■□□□□ 0.17
LIG1-218ENST00000599322 AZI2Q9H6S1 392 aa16.12■□□□□ 0.17
LIG1-218ENST00000599322 PKD2L1Q9P0L9 805 aa16.12■□□□□ 0.17
LIG1-218ENST00000599322 HAS3O00219 553 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 ITGB5P18084 799 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 SREBF1P36956 1147 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 ARHGAP4P98171 946 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 PTK7Q13308 1070 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 NTRK3Q16288 839 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 TMEM240Q5SV17 173 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 GDF6Q6KF10 455 aaPredicted RBP16.11■□□□□ 0.17
LIG1-218ENST00000599322 TYW1BQ6NUM6 668 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 AFAP1L1Q8TED9 768 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 GLG1Q92896 1179 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 PGBD1Q96JS3 809 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 COL25A1Q9BXS0 654 aaPredicted RBP16.11■□□□□ 0.17
LIG1-218ENST00000599322 TMEM260Q9NX78 707 aa16.11■□□□□ 0.17
LIG1-218ENST00000599322 ZBBXA8MT70 800 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 TCF7P36402 384 aaPredicted RBP16.1■□□□□ 0.17
LIG1-218ENST00000599322 SEMA3FQ13275 785 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 PKN1Q16512 942 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 GALNT17Q6IS24 598 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 NIPA1Q7RTP0 329 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 DEFB128Q7Z7B8 93 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 PPP1R13LQ8WUF5 828 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 MYLIPQ8WY64 445 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 WASF1Q92558 559 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 ATP6V0A1Q93050 837 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 SCLYQ96I15 445 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 LARP6Q9BRS8 491 aaKnown RBP16.1■□□□□ 0.17
LIG1-218ENST00000599322 C16orf70Q9BSU1 422 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 SMARCAD1Q9H4L7 1026 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 JPH1Q9HDC5 661 aaPredicted RBP16.1■□□□□ 0.17
LIG1-218ENST00000599322 KCNH7Q9NS40 1196 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 SLC9A2Q9UBY0 812 aa16.1■□□□□ 0.17
LIG1-218ENST00000599322 MYH7BA7E2Y1 1941 aa16.09■□□□□ 0.17
LIG1-218ENST00000599322 SCN10AQ9Y5Y9 1956 aa16.09■□□□□ 0.17
LIG1-218ENST00000599322 PPFIA3O75145 1194 aa16.09■□□□□ 0.17
LIG1-218ENST00000599322 IQCF3P0C7M6 154 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms